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[184900_at]

Description Y116A8B.4 /REP_DB=WormBase Gene ID /WP=CE16681 /TR=O62402 /GB=CAA16289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      4grp_high_8_8 > 13      6grp_total > 80      4grp_total > 03      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 68.9
(-2.1)
P 		45.7
(-3)
M 		67
(-2.2)
P 		199.9
(3)
P 		154
B 92.2
(-0.7)
P 		74.9
(-1.9)
P 		57.8
(-3)
P 		148.3
(3)
P 		91
C 57.4
(-2.4)
P 		78.1
(-1.5)
P 		41.6
(-3)
A 		192.3
(3)
P 		151
avr 72.8
(-2.2) 		66.2
(-2.5) 		55.5
(-3) 		180.2
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 105.4
(3)
P 		52.3
(-3)
P 		99.6
(2.3)
P 		96.1
(1.9)
P 		80.4
(0.2)
P 		69.9
(-1)
A 		53
B 67.2
(-1.7)
P 		94.4
(3)
P 		76.6
(-0.1)
P 		68.3
(-1.5)
A 		69.5
(-1.3)
P 		59.4
(-3)
P 		35
C 63.2
(-1.4)
A 		83
(0.2)
P 		43.3
(-3)
A 		117.1
(3)
P 		51.2
(-2.4)
A 		72.3
(-0.6)
P 		74
avr 78.6
(-0.4) 		76.6
(-0.9) 		73.2
(-1.6) 		93.8
(3) 		67
(-3) 		67.2
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.1
(1.7)
P 		9.9
(-3)
M 		17.5
(-0.6)
P 		29.3
(3)
P 		19
B 29.4
(2.3)
P 		18.5
(-1.3)
P 		13.4
(-3)
P 		31.6
(3)
P 		18
C 19
(-1.5)
P 		22.4
(-0.4)
P 		14.5
(-3)
A 		32.4
(3)
P 		18
avr 24.5
(0.5) 		16.9
(-2.3) 		15.1
(-3) 		31.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 19.4
(-1.1)
P 		18.6
(-1.7)
P 		21.7
(0.8)
P 		24.4
(3)
P 		24.2
(2.8)
P 		17
(-3)
A 		7
B 23.4
(-0.6)
P 		31.4
(3)
P 		18.6
(-2.8)
P 		18.1
(-3)
A 		28.2
(1.6)
P 		22.1
(-1.2)
P 		13
C 23.4
(2.2)
A 		25.3
(3)
P 		11
(-3)
A 		23.5
(2.2)
P 		16.6
(-0.7)
A 		24.2
(2.5)
P 		14
avr 22.1
(0.8) 		25.1
(3) 		17.1
(-3) 		22
(0.7) 		23
(1.4) 		21.1
(0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8884
Sequence Type Exemplar sequence
Representative Public ID Y116A8B.4 NCBI
Target Description Y116A8B.4 /REP_DB=WormBase Gene ID /WP=CE16681 /TR=O62402 /GB=CAA16289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070654 NCBI Caenorhabditis elegans Y116A8B.4 (Y116A8B.4) mRNA, complete cds. 11/11 None
Y116A8B.4 ENSEMBL cdna:known chromosome:CEL140:IV:17222778:17225087:1 gene:Y116A8B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044304 3/11 Cross Hyb Matching Probes None
GENEFINDER00000044308 2/11 Cross Hyb Matching Probes None
GENEFINDER00000044310 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17222783-17225093(+) 94.74 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8B.4
Entrez Gene 190989 Entrez gene
SwissProt O62402 EMBL-EBI
WormBase CE16681 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16289 Hypothetical protein Y116A8B.4 [Caenorhabditis elegans] ref|NP_503055.1| Y116A8B.4 [Caenorhabditis elegans] 1.0E-147
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503055.1 2 95-117,127-146
Y116A8B.4 2 95-117,127-146
Sequence
Target Sequence 
>C. ELEGANS:184900_AT
aatgtgcgcatacgcctaccgaattgatcgaatgtattcatttgatgtatttttatgttt
acttttccatattttttattcagttttatgtttgtcttttactcccgtcgttctcttttt
cacccctttttctgtttacacagtctctttttcacctccttctctatttttcagtatcac
tcaaaccactcaccttttcatttttaaaaccttttttgagttggaaatttaatctttcca
ttactttctcacgtcttaataacgtttcaaaaatgattaaaaaccaaactgaaaatttgg
gaattgctgaaatcgtaatttcttctggaaatatcaaattttcttttccagactcgtttt
tatttgactatgcttggcaatttaaaatagtgcaaaaaaaggttacctctccaactccaa
cttgcttggtagaaagcggacatccagaatattcaaattctaccttcaactctccggggt
cttccaatgaaagtcaacgaccaaattattatcaaattcttttcgctttatttccgcgcg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGCGCATACGCCTACCGAATT 618 163 245 Antisense
TCACCCCTTTTTCTGTTTACACAGT 629 625 364 Antisense
TGTTTACACAGTCTCTTTTTCACCT 29 561 377 Antisense
CCTCCTTCTCTATTTTTCAGTATCA 168 267 399 Antisense
TTCAGTATCACTCAAACCACTCACC 555 687 414 Antisense
TTCCATTACTTTCTCACGTCTTAAT 666 695 480 Antisense
TCAAATTTTCTTTTCCAGACTCGTT 282 629 578 Antisense
CTCTCCAACTCCAACTTGCTTGGTA 16 233 651 Antisense
TATTCAAATTCTACCTTCAACTCTC 605 663 694 Antisense
CTCTCCGGGGTCTTCCAATGAAAGT 260 231 714 Antisense
TTCTTTTCGCTTTATTTCCGCGCGA 513 689 761 Antisense
Sequence Source Affymetrix Proprietary Database