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[184898_s_at]

Description C17C3.13 /REP_DB=WormBase Gene ID /WP=CE03984 /TR=Q27220 /GB=AAK31427.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 21.6
(-1.8)
A 		36.1
(-0.7)
A 		4.9
(-3)
A 		87.9
(3)
P 		83
B 41.4
(2.9)
A 		29.1
(0.4)
A 		12.5
(-3)
A 		41.9
(3)
A 		29
C 1.8
(-3)
A 		8.8
(-2.5)
A 		14.3
(-2.2)
A 		93.5
(3)
P 		92
avr 21.6
(-2) 		24.7
(-1.7) 		10.6
(-3) 		74.4
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 23.1
(-0.5)
A 		39.4
(2)
A 		6.6
(-3)
A 		13.3
(-2)
A 		46.3
(3)
A 		12.1
(-2.2)
A 		40
B 23.5
(0.6)
A 		36.4
(3)
A 		21.9
(0.3)
M 		4.7
(-3)
A 		22.1
(0.3)
A 		18.8
(-0.3)
A 		32
C 13.9
(-0.9)
A 		36.1
(3)
A 		16.9
(-0.4)
A 		2
(-3)
A 		23.3
(0.7)
A 		7.8
(-2)
A 		34
avr 20.2
(-0.4) 		37.3
(3) 		15.1
(-1.4) 		6.7
(-3) 		30.6
(1.7) 		12.9
(-1.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.9
(0.4)
A 		7.8
(0.4)
A 		1.3
(-3)
A 		12.9
(3)
P 		12
B 13.2
(3)
A 		7.2
(-0.5)
A 		2.9
(-3)
A 		8.9
(0.5)
A 		10
C 0.6
(-3)
A 		2.5
(-2.3)
A 		5
(-1.3)
A 		15.8
(3)
P 		15
avr 7.2
(-0.4) 		5.8
(-1.3) 		3.1
(-3) 		12.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.3
(-1.6)
A 		14
(3)
A 		1.4
(-3)
A 		3.4
(-2)
A 		14
(3)
A 		3
(-2.2)
A 		13
B 8.2
(0.8)
A 		12.1
(3)
A 		5.3
(-0.8)
M 		1.3
(-3)
A 		9
(1.3)
A 		7
(0.2)
A 		11
C 5.2
(-0.3)
A 		11
(3)
A 		4.3
(-0.8)
A 		0.4
(-3)
A 		7.6
(1.1)
A 		2.6
(-1.8)
A 		11
avr 5.9
(-0.6) 		12.4
(3) 		3.7
(-1.9) 		1.7
(-3) 		10.2
(1.8) 		4.2
(-1.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184898_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4323
Sequence Type Exemplar sequence
Representative Public ID C17C3.13 NCBI
Target Description C17C3.13 /REP_DB=WormBase Gene ID /WP=CE03984 /TR=Q27220 /GB=AAK31427.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062672(11), NM_062673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062672 NCBI Caenorhabditis elegans C17C3.2 (C17C3.2) mRNA, complete cds. 11/11 None
NM_062673 NCBI Caenorhabditis elegans C17C3.13 (C17C3.13) mRNA, complete cds. 11/11 None
SNAP00000005294 ENSEMBL cdna:SNAP chromosome:CEL140:II:5565777:5566662:1 11/11 None
SNAP00000005295 ENSEMBL cdna:SNAP chromosome:CEL140:II:5567756:5568641:-1 11/11 None
GENEFINDER00000005302 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5565777:5570934:1 9/11 None
C17C3.2 ENSEMBL cdna:known chromosome:CEL140:II:5566052:5566662:1 gene:C17C3.2 11/11 None
C17C3.13 ENSEMBL cdna:known chromosome:CEL140:II:5567756:5568366:-1 gene:C17C3.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5566049-5566660(+) 100.0 100.0
chrII:5567753-5568364(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C17C3.2
C17C3.13
Entrez Gene 182713 Entrez gene
182721 Entrez gene
SwissProt Q27220 EMBL-EBI
WormBase CE03984 Wormbase
CE03984 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31416 Hypothetical protein C17C3.2 [Caenorhabditis elegans] gb|AAK31427.1| Hypothetical protein C17C3.13 [Caenorhabditis elegans] ref|NP_495074.1| C17C3.13 [Caenorhabditis elegans] ref|NP_495073.1| C17C3.2 [Caenorhabditis elegans] 4.0E-98
blast AAK31416 Hypothetical protein C17C3.2 [Caenorhabditis elegans] gb|AAK31427.1| Hypothetical protein C17C3.13 [Caenorhabditis elegans] ref|NP_495074.1| C17C3.13 [Caenorhabditis elegans] ref|NP_495073.1| C17C3.2 [Caenorhabditis elegans] 7.0E-98
blast AAK31416 Hypothetical protein C17C3.2 [Caenorhabditis elegans] gb|AAK31427.1| Hypothetical protein C17C3.13 [Caenorhabditis elegans] ref|NP_495074.1| C17C3.13 [Caenorhabditis elegans] ref|NP_495073.1| C17C3.2 [Caenorhabditis elegans] 8.0E-85
blast AAO38630 Hypothetical protein F59E12.6a [Caenorhabditis elegans] ref|NP_495095.2| F59E12.6a [Caenorhabditis elegans] 2.0E-53
blast AAO38631 Hypothetical protein F59E12.6b [Caenorhabditis elegans] ref|NP_871929.1| F59E12.6b [Caenorhabditis elegans] 5.0E-49
Sequence
Target Sequence 
>C. ELEGANS:184898_S_AT
gcagcttctcttcagaatacctcaactggaattagtcatgctgtatttcacttcaatgga
gtttttggatattactctccaattcaacaaggagaatcttatgcatatagaacttctgtt
catcatctgtggtacattccgggaaatgagagattcaacgactagatcaattaacatcag
ttctctgttaaaagttctggagaagctatctccctatcagatccgcgggaaccagcatga
tatttgtgaaatgatgtcaaatatagcacagtggttgaaaatagccatagaagcttcaat
ggcataccagatgaaccatgtgaacaatcgctgtgaagatgagaatcgtcaagttgagaa
tcgtgaagttgagaagtttagagagttgtatctcgatcaaatggagatattcaatcgtat
tttcacatccttgagctacaatgattcattaggcctaacagtcgatgctcaagttggaaa
cttccgtgactcagtggaacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTTCTCTTCAGAATACCTCAA 10 315 15 Antisense
GTCATGCTGTATTTCACTTCAATGG 375 467 49 Antisense
GGATATTACTCTCCAATTCAACAAG 583 509 81 Antisense
GTTCATCATCTGTGGTACATTCCGG 403 443 132 Antisense
TATCTCCCTATCAGATCCGCGGGAA 181 659 221 Antisense
GATCCGCGGGAACCAGCATGATATT 171 417 234 Antisense
GAAGCTTCAATGGCATACCAGATGA 605 341 304 Antisense
GAACCATGTGAACAATCGCTGTGAA 12 347 327 Antisense
TCGTATTTTCACATCCTTGAGCTAC 202 605 429 Antisense
TAGGCCTAACAGTCGATGCTCAAGT 385 653 464 Antisense
AACTTCCGTGACTCAGTGGAACGCT 442 137 493 Antisense
Sequence Source Affymetrix Proprietary Database