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[184897_at]

Description Y39A3B.1 /REP_DB=WormBase Gene ID /WP=CE21642 /TR=Q9N516 /GB=AAF60512.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 40      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 10
(-3)
A 		100.9
(2.4)
A 		111.1
(3)
A 		27.9
(-1.9)
A 		101
B 17.9
(-3)
A 		121.1
(1.2)
A 		166.1
(3)
A 		118.8
(1.1)
A 		148
C 13.4
(-3)
A 		87.3
(0.7)
A 		104.2
(1.5)
A 		133.9
(3)
A 		121
avr 13.8
(-3) 		103.1
(1.7) 		127.1
(3) 		93.5
(1.2) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 12.8
(-3)
A 		92.1
(-0.6)
A 		15.3
(-2.9)
A 		191.2
(2.4)
A 		209.5
(3)
A 		93.8
(-0.5)
A 		197
B 20
(-3)
A 		99.2
(0)
A 		142
(1.7)
A 		132.3
(1.3)
A 		177.2
(3)
A 		83.4
(-0.6)
A 		157
C 8.4
(-3)
A 		149.6
(2.2)
A 		13.4
(-2.8)
A 		144.4
(2)
A 		171.3
(3)
A 		133.2
(1.6)
A 		163
avr 13.7
(-3) 		113.6
(0.5) 		56.9
(-1.5) 		156
(2) 		186
(3) 		103.5
(0.1) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 3.6
(-3)
A 		21.9
(1.3)
A 		29
(3)
A 		4.1
(-2.9)
A 		25
B 5.7
(-3)
A 		29.9
(1.4)
A 		38.5
(3)
A 		25.3
(0.6)
A 		33
C 4.5
(-3)
A 		25.1
(0.9)
A 		36.3
(3)
A 		22.6
(0.4)
A 		32
avr 4.6
(-3) 		25.6
(1.2) 		34.6
(3) 		17.3
(-0.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 2.4
(-3)
A 		32.8
(-0)
A 		3.3
(-2.9)
A 		48.5
(1.5)
A 		63.2
(3)
A 		22.8
(-1)
A 		61
B 7
(-3)
A 		33
(-0.6)
A 		34.5
(-0.5)
A 		35
(-0.4)
A 		72
(3)
A 		31.1
(-0.8)
A 		65
C 3.1
(-3)
A 		45.7
(1.9)
A 		3.4
(-3)
A 		29
(-0)
A 		55.4
(3)
A 		44.6
(1.8)
A 		52
avr 4.2
(-3) 		37.2
(0.3) 		13.7
(-2) 		37.5
(0.4) 		63.5
(3) 		32.8
(-0.1) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8274
Sequence Type Exemplar sequence
Representative Public ID Y39A3B.1 NCBI
Target Description Y39A3B.1 /REP_DB=WormBase Gene ID /WP=CE21642 /TR=Q9N516 /GB=AAF60512.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065089(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065089 NCBI Caenorhabditis elegans Y39A3B.1 (Y39A3B.1) mRNA, complete cds. 10/11 None
GENEFINDER00000018253 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2006017:2009184:1 11/11 None
Y39A3B.1 ENSEMBL cdna:known chromosome:CEL140:III:2006017:2009184:1 gene:Y39A3B.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018244 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2006016-2009184(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3B.1
Entrez Gene 189721 Entrez gene
SwissProt Q9N516 EMBL-EBI
WormBase CE35079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497490 Y39A3B.1 [Caenorhabditis elegans] gb|AAF60512.2| Hypothetical protein Y39A3B.1 [Caenorhabditis elegans] 0.0
blast CAE69098 Hypothetical protein CBG15123 [Caenorhabditis briggsae] 0.0
blast BAB76409.1 all4710 [Nostoc sp. PCC 7120] pir||AF2394 hypothetical protein all4710 [imported] - Nostoc sp. (strain PCC 7120) ref|NP_488750.1| hypothetical protein all4710 [Nostoc sp. PCC 7120] 6.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007484 EMBL-EBI Peptidase M28 6.9E-5
Sequence
Target Sequence 
>C. ELEGANS:184897_AT
cgtccttctaccgctaatggaacgcactaacacaaaagttgtgggtactgtaatcgccga
cggtctgctacattttgacccgttcccggcgtcccaggcaatgccaaatgagttcgagtc
gttcttcccggaagccgctcaaaagctccacgagcattctcatatgggagattttattca
agtttcgtctcgaagtgatattgatgacgatttggtgcaaaaatacaccagagcctacga
tcgttcatgtgagatgctctcttcagactggtcattccatccatggtccctgaatcttca
gatgaaccttgctaacatcacctcactagaccggttatacaaactccacccgtttttgta
ctcggatcactcatcatttttcttccattccaagcagaaaagcgtgcagattccaaccat
atatttgactgatacattaaacctccgcggtgtccggcagtactgtgtgcaatgtgatgg
tctctacatgatgactgaacaaaacatgaaattcctggcattgatgacagattctctgat
cagattattgattgatatgagcggatcgtcggcgtcagccgtcgtcgatgacttgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCCTTCTACCGCTAATGGAACGC 347 243 510 Antisense
TAATCGCCGACGGTCTGCTACATTT 420 635 560 Antisense
AAATGAGTTCGAGTCGTTCTTCCCG 640 119 615 Antisense
TTCTTCCCGGAAGCCGCTCAAAAGC 699 687 631 Antisense
AATACACCAGAGCCTACGATCGTTC 53 173 731 Antisense
GATGCTCTCTTCAGACTGGTCATTC 63 415 762 Antisense
CATCCATGGTCCCTGAATCTTCAGA 330 211 787 Antisense
AACATCACCTCACTAGACCGGTTAT 670 137 823 Antisense
CGTTTTTGTACTCGGATCACTCATC 323 247 860 Antisense
GACTGATACATTAAACCTCCGCGGT 350 375 936 Antisense
GTCAGCCGTCGTCGATGACTTGTAC 510 463 1083 Antisense
Sequence Source Affymetrix Proprietary Database