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[184896_at]

Description C32B5.16 /REP_DB=WormBase Gene ID /WP=CE08524 /TR=P91109 /GB=AAB37971.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 42      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 111.2
(-0.6)
A 		123.8
(0.6)
A 		86
(-3)
A 		149.6
(3)
A 		64
B 122.8
(0.7)
A 		149.4
(2.9)
P 		150.8
(3)
A 		78.4
(-3)
A 		72
C 58.2
(-3)
A 		140.6
(3)
P 		94.1
(-0.4)
P 		112.7
(1)
A 		82
avr 97.4
(-3) 		137.9
(3) 		110.3
(-1.1) 		113.6
(-0.6) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 123.6
(3)
A 		94
(-0.2)
M 		67.9
(-3)
A 		99.2
(0.4)
M 		91.4
(-0.5)
A 		114.9
(2.1)
P 		56
B 111.7
(2.1)
M 		101.2
(1.3)
P 		75.6
(-0.7)
A 		45.4
(-3)
A 		87.8
(0.3)
A 		123.5
(3)
P 		78
C 118.9
(0.7)
P 		142.2
(3)
P 		118.8
(0.7)
P 		81.8
(-3)
A 		97.4
(-1.5)
A 		137.5
(2.5)
P 		60
avr 118.1
(2.1) 		112.5
(1.5) 		87.4
(-1.6) 		75.5
(-3) 		92.2
(-1) 		125.3
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 40.5
(3)
A 		26.9
(-1.4)
A 		22.5
(-2.8)
A 		21.9
(-3)
A 		19
B 39.2
(3)
A 		36.9
(2.4)
P 		34.9
(1.9)
A 		16.7
(-3)
A 		23
C 19.3
(-2.9)
A 		40.4
(3)
P 		32.8
(0.9)
P 		19
(-3)
A 		21
avr 33
(2.3) 		34.7
(3) 		30.1
(1.2) 		19.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 22.8
(-0.4)
A 		33.4
(3)
M 		14.8
(-3)
A 		25.2
(0.4)
M 		27.6
(1.1)
A 		28
(1.3)
P 		19
B 38.9
(1.7)
M 		33.7
(0.8)
P 		18.3
(-1.9)
A 		12
(-3)
A 		35.7
(1.2)
A 		46
(3)
P 		34
C 44.1
(2.6)
P 		43.4
(2.5)
P 		30.2
(-0.2)
P 		16.5
(-3)
A 		31.5
(0.1)
A 		46
(3)
P 		30
avr 35.3
(1.7) 		36.8
(2.1) 		21.1
(-2.1) 		17.9
(-3) 		31.6
(0.7) 		40
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4743
Sequence Type Exemplar sequence
Representative Public ID C32B5.16 NCBI
Target Description C32B5.16 /REP_DB=WormBase Gene ID /WP=CE08524 /TR=P91109 /GB=AAB37971.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061464 NCBI Caenorhabditis elegans C32B5.16 (C32B5.16) mRNA, complete cds. 11/11 None
SNAP00000042174 ENSEMBL cdna:SNAP chromosome:CEL140:II:958967:960107:1 11/11 None
GENEFINDER00000042187 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:958967:960702:1 11/11 None
C32B5.16 ENSEMBL cdna:known chromosome:CEL140:II:958967:960107:1 gene:C32B5.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:958965-960106(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-4
Ensembl C32B5.16
Entrez Gene 183119 Entrez gene
SwissProt P91109 EMBL-EBI
WormBase CE08524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493865 C32B5.16 [Caenorhabditis elegans] gb|AAB37971.1| Hypothetical protein C32B5.16 [Caenorhabditis elegans] 0.0
blast NP_493868 C32B5.14 [Caenorhabditis elegans] gb|AAB37969.1| Hypothetical protein C32B5.14 [Caenorhabditis elegans] 1.0E-55
blast NP_493872 C32B5.4 [Caenorhabditis elegans] gb|AAB37960.1| Hypothetical protein C32B5.4 [Caenorhabditis elegans] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:184896_AT
gttaaagtgaaccacctcaccattaaatgtggaaatgttatccgaattctgtcaactgtg
aaatttcgcgtcaaaatattggaagttcttgatgaaaatacttatgatgaattggacacc
attcgttcgataattcaaacctctagccttccattaaacgttgaaacatttcggtttcta
caagccccagtatccagacatgaacttattagaacggctggaatgttggaaattcgatgt
tcaattgatgtccacacgctagcaacactgaaccacagaagagttcatgctccatatttt
tatgaatggagaagcaattgttttgtcgattttttggaaatttggatggaatacggtaaa
gaaattgggtcttattatacattcaatattttcgagcataggatagataaagctatgaag
agaatcagaaaaatgtataaaagaagtgttgaggctgggtctgcgaggagggctggtcag
ctcactctcaatatgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAAAGTGAACCACCTCACCATTA 40 445 466 Antisense
AATTGGACACCATTCGTTCGATAAT 605 177 575 Antisense
TCGATAATTCAAACCTCTAGCCTTC 588 603 592 Antisense
CCTCTAGCCTTCCATTAAACGTTGA 277 267 605 Antisense
AAGCCCCAGTATCCAGACATGAACT 260 149 647 Antisense
GATGTTCAATTGATGTCCACACGCT 355 409 701 Antisense
TCCACACGCTAGCAACACTGAACCA 659 585 716 Antisense
GAAGAGTTCATGCTCCATATTTTTA 509 337 743 Antisense
TGTTGAGGCTGGGTCTGCGAGGAGG 609 561 912 Antisense
TGCGAGGAGGGCTGGTCAGCTCACT 87 583 927 Antisense
GGTCAGCTCACTCTCAATATGAACA 383 503 940 Antisense
Sequence Source Affymetrix Proprietary Database