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[184895_at]

Description Y47G6A.3 /REP_DB=WormBase Gene ID /WP=CE22076 /TR=Q9N3R8 /GB=AAF60655.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 5
(-2.9)
A 		7.1
(-2.7)
A 		3.8
(-3)
A 		78.7
(3)
A 		75
B 8.4
(-1.4)
A 		15.7
(1.2)
A 		4
(-3)
A 		20.8
(3)
A 		17
C 15
(-3)
A 		33
(-0.2)
A 		35
(0.1)
A 		53.2
(3)
A 		38
avr 9.5
(-3) 		18.6
(-1.7) 		14.3
(-2.3) 		50.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 5.8
(-2.9)
A 		28.3
(-2)
A 		4.4
(-3)
A 		71.5
(-0.2)
A 		76.3
(0)
P 		146.7
(3)
P 		142
B 27.6
(-2)
A 		13.4
(-2.7)
A 		51.5
(-0.7)
A 		8.1
(-3)
A 		94.4
(1.6)
P 		119.8
(3)
P 		112
C 22.1
(-2.4)
A 		26.7
(-2.2)
A 		6.9
(-3)
A 		33.4
(-1.9)
A 		81.7
(0.1)
A 		150.7
(3)
P 		144
avr 18.5
(-3) 		22.8
(-2.8) 		20.9
(-2.9) 		37.7
(-2) 		84.1
(0.3) 		139.1
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.8
(-2.5)
A 		1.5
(-2.7)
A 		1
(-3)
A 		11.5
(3)
A 		11
B 2.7
(0.1)
A 		3.9
(2.1)
A 		0.9
(-3)
A 		4.4
(3)
A 		4
C 5
(-3)
A 		9.5
(0.8)
A 		12.2
(3)
A 		9
(0.3)
A 		7
avr 3.2
(-3) 		5
(-0.9) 		4.7
(-1.2) 		8.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 1.1
(-3)
A 		10.1
(-1.4)
A 		1
(-3)
A 		18.1
(-0)
A 		23
(0.8)
P 		35.7
(3)
P 		35
B 9.6
(-2)
A 		4.5
(-2.7)
A 		12.5
(-1.5)
A 		2.2
(-3)
A 		38.3
(2.1)
P 		44.7
(3)
P 		43
C 8.2
(-2.2)
A 		8.2
(-2.2)
A 		1.8
(-3)
A 		6.7
(-2.4)
A 		26.4
(0)
A 		50.5
(3)
P 		49
avr 6.3
(-2.8) 		7.6
(-2.6) 		5.1
(-3) 		9
(-2.4) 		29.2
(0.8) 		43.6
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.314
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.3 NCBI
Target Description Y47G6A.3 /REP_DB=WormBase Gene ID /WP=CE22076 /TR=Q9N3R8 /GB=AAF60655.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058782 NCBI Caenorhabditis elegans Y47G6A.3 (Y47G6A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000034064 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3602022:3602860:1 11/11 None
Y47G6A.3 ENSEMBL cdna:known chromosome:CEL140:I:3602022:3602860:1 gene:Y47G6A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033995 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3602021-3602860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.3
Entrez Gene 189991 Entrez gene
SwissProt Q9N3R8 EMBL-EBI
WormBase CE22076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491183 Y47G6A.3 [Caenorhabditis elegans] gb|AAF60655.1| Hypothetical protein Y47G6A.3 [Caenorhabditis elegans] 8.0E-71
blast CAE68950 Hypothetical protein CBG14930 [Caenorhabditis briggsae] 1.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491183.1 1 20-42
Y47G6A.3 1 20-42
GENEFINDER00000034064 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:184895_AT
atgcaagccttctcgattaatgtgacggaatattcaatggcatatcgatttaacattttg
gcaattggaggcattttcaacatgacaatttcattgttcaatcttatctttgccctcttc
aatttttacctaatctttggaaggtatgatttgagacttcgtcaaattgctgaaaaactg
aaaatcgcggtggacgagatggccggaagggatttgcacccgaagcttaaaatgtccctc
tcgcgtacaattccacggggaacttcaatgcttgatgacatttggaagttgctcaaagag
cccagtgcactgtttgataatgctaatgatctactcccaggacagaaagaagaacgtatt
gatagaatgaatgaaaagaaagaggaagacgcaaaaactccgaaaaattcgaaaaattcg
aaaacaccgaagaaggccaaaatgccgaaaaacgccaaaacgccaagaacgccaaagtct
tctgcgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAGCCTTCTCGATTAATGTGA 80 43 13 Antisense
ATTGTTCAATCTTATCTTTGCCCTC 562 3 105 Antisense
TATCTTTGCCCTCTTCAATTTTTAC 671 659 117 Antisense
ATCGCGGTGGACGAGATGGCCGGAA 252 35 196 Antisense
GGCCGGAAGGGATTTGCACCCGAAG 549 477 213 Antisense
GCACCCGAAGCTTAAAATGTCCCTC 529 315 228 Antisense
CTCTCGCGTACAATTCCACGGGGAA 447 227 250 Antisense
TCCACGGGGAACTTCAATGCTTGAT 419 589 264 Antisense
GCTCAAAGAGCCCAGTGCACTGTTT 559 301 303 Antisense
AATGCTAATGATCTACTCCCAGGAC 147 167 331 Antisense
AGAACGCCAAAGTCTTCTGCGTCAA 702 73 478 Antisense
Sequence Source Affymetrix Proprietary Database