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[184894_at]

Description F16G10.2 /REP_DB=WormBase Gene ID /WP=CE19391 /TR=O76590 /GB=AAC26270.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 49      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 53
(-3)
A 		89.4
(0.3)
P 		119
(3)
A 		72.4
(-1.2)
A 		66
B 76.6
(-1.6)
A 		172.5
(3)
P 		144.1
(1.6)
A 		46.4
(-3)
A 		126
C 119.9
(-2.6)
A 		133.8
(-0.6)
A 		117.4
(-3)
P 		158.7
(3)
A 		41
avr 83.2
(-3) 		131.9
(3) 		126.8
(2.4) 		92.5
(-1.9) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 132.1
(3)
A 		99.7
(0.3)
A 		92.6
(-0.3)
A 		77
(-1.7)
A 		78.1
(-1.6)
A 		61.2
(-3)
A 		71
B 45
(0.2)
A 		51.6
(2.5)
A 		53
(3)
A 		47.5
(1.1)
A 		41.6
(-1)
A 		35.8
(-3)
A 		17
C 101.6
(2)
A 		87.9
(0.5)
A 		111.8
(3)
A 		85.2
(0.3)
A 		53.3
(-3)
A 		59
(-2.4)
A 		59
avr 92.9
(3) 		79.7
(1.1) 		85.8
(2) 		69.9
(-0.4) 		57.7
(-2.2) 		52
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 19.3
(-0.5)
A 		19.4
(-0.4)
P 		31.1
(3)
A 		10.6
(-3)
A 		21
B 24.4
(-0.3)
A 		42.6
(3)
P 		33.4
(1.3)
A 		9.9
(-3)
A 		33
C 39.7
(2.5)
A 		38.5
(2)
A 		40.9
(3)
P 		26.8
(-3)
A 		14
avr 27.8
(0.7) 		33.5
(2.5) 		35.1
(3) 		15.8
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 24.4
(-0.2)
A 		35.4
(3)
A 		20.2
(-1.4)
A 		19.5
(-1.7)
A 		23.6
(-0.5)
A 		14.9
(-3)
A 		21
B 15.7
(1)
A 		17.2
(3)
A 		12.9
(-2.6)
A 		12.6
(-3)
A 		16.9
(2.6)
A 		13.4
(-2)
A 		5
C 37.7
(3)
A 		26.8
(-0.2)
A 		28.5
(0.3)
A 		17.1
(-3)
A 		17.2
(-3)
A 		19.8
(-2.2)
A 		21
avr 25.9
(2.7) 		26.5
(3) 		20.5
(-0.4) 		16.4
(-2.8) 		19.2
(-1.2) 		16
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5164
Sequence Type Exemplar sequence
Representative Public ID F16G10.2 NCBI
Target Description F16G10.2 /REP_DB=WormBase Gene ID /WP=CE19391 /TR=O76590 /GB=AAC26270.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061858 NCBI Caenorhabditis elegans F16G10.2 (F16G10.2) mRNA, complete cds. 11/11 None
F16G10.2 ENSEMBL cdna:known chromosome:CEL140:II:2375274:2375992:1 gene:F16G10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2375272-2375991(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.2
Entrez Gene 184577 Entrez gene
SwissProt O76590 EMBL-EBI
WormBase CE19391 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26270 Hypothetical protein F16G10.2 [Caenorhabditis elegans] ref|NP_494259.1| F16G10.2 [Caenorhabditis elegans] 1.0E-101
blast AAC26272 Hypothetical protein F16G10.4 [Caenorhabditis elegans] ref|NP_494257.1| F16G10.4 [Caenorhabditis elegans] 9.0E-27
blast NP_503757 R05D8.11 [Caenorhabditis elegans] gb|AAF39951.1| Hypothetical protein R05D8.11 [Caenorhabditis elegans] 4.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.1E-68
Sequence
Target Sequence 
>C. ELEGANS:184894_AT
atactgtaacgtcatgttcccttctgttatgcttgatggtaataacagaaagttgcatgc
gaacagttccaccggatgaagcctatattcctgtcaccatggctcctgatgaatgcctgg
acatcaaaacttcgccgtgtggagatttggaatcgttgtttgaaagtaagtccattatcc
attttcgattttctctctccattatcgttttctctctcacacccgtggagcacgttgaga
aagacggctgcgaagtgttaacttgtcccgataaccaagtgtttcttgcactctcttctt
ttgataaaagtgaagtaccacggccatctgaagtgccggaaacccaatcatttcaaatca
cctcaaaattgacgggaaccgatggtgagagtataactgaccttttgggaatcatttgtg
atggcgataaatggatgatcacgaaatatccaattggatttgctgcacctcctgctggtt
taattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTGTAACGTCATGTTCCCTTCT 692 23 17 Antisense
GTTCCCTTCTGTTATGCTTGATGGT 607 441 32 Antisense
GCGAACAGTTCCACCGGATGAAGCC 245 289 75 Antisense
TGTCACCATGGCTCCTGATGAATGC 415 559 108 Antisense
GACATCAAAACTTCGCCGTGTGGAG 501 367 136 Antisense
TCTCACACCCGTGGAGCACGTTGAG 81 613 231 Antisense
GGCTGCGAAGTGTTAACTTGTCCCG 643 539 262 Antisense
ACCAAGTGTTTCTTGCACTCTCTTC 351 85 290 Antisense
GAAGTACCACGGCCATCTGAAGTGC 523 335 328 Antisense
TCCAATTGGATTTGCTGCACCTCCT 447 587 465 Antisense
TGCACCTCCTGCTGGTTTAATTGGT 137 569 480 Antisense
Sequence Source Affymetrix Proprietary Database