[Home] | [Total List]

[184892_at]

Description Y39E4B.10 /REP_DB=WormBase Gene ID /WP=CE21721 /TR=Q9U2K2 /GB=CAB54431.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 36.2
(3)
A 		24.9
(0.9)
A 		4.3
(-3)
A 		23.7
(0.6)
A 		32
B 14.8
(-0.4)
A 		9.5
(-1.8)
A 		5
(-3)
A 		27.5
(3)
A 		23
C 26.1
(-0.6)
A 		27.2
(-0.5)
A 		6
(-3)
A 		56.4
(3)
A 		50
avr 25.7
(1) 		20.5
(0) 		5.1
(-3) 		35.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 12.5
(-1.5)
A 		5.6
(-2.7)
A 		17.6
(-0.6)
A 		4
(-3)
A 		38.3
(3)
A 		8
(-2.3)
A 		34
B 26.7
(2.8)
A 		20.1
(1.2)
A 		27.4
(3)
A 		5.9
(-2.3)
A 		10.7
(-1.1)
A 		3
(-3)
A 		24
C 5.9
(-2.3)
A 		37.9
(3)
A 		37.7
(3)
A 		31.2
(1.9)
A 		1.9
(-3)
A 		9.3
(-1.8)
A 		36
avr 15
(-0.6) 		21.2
(1.2) 		27.6
(3) 		13.7
(-1) 		17
(-0.1) 		6.8
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.2
(3)
A 		5.4
(-0.9)
A 		1.1
(-3)
A 		3.5
(-1.8)
A 		12
B 4.7
(1.5)
A 		2.3
(-1.6)
A 		1.2
(-3)
A 		5.9
(3)
A 		5
C 8.6
(2.3)
A 		7.8
(1.6)
A 		2.1
(-3)
A 		9.5
(3)
A 		7
avr 8.8
(3) 		5.2
(0) 		1.5
(-3) 		6.3
(0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		2
(-2.4)
A 		3.8
(-1.4)
A 		1
(-3)
A 		11.6
(3)
A 		1.9
(-2.5)
A 		11
B 9.3
(3)
A 		6.7
(1.1)
A 		6.7
(1.1)
A 		1.6
(-2.6)
A 		4.4
(-0.6)
A 		1.1
(-3)
A 		8
C 2.2
(-2.1)
A 		11.6
(3)
A 		9.6
(1.9)
A 		6.3
(0.1)
A 		0.6
(-3)
A 		3.1
(-1.6)
A 		11
avr 4.6
(0.3) 		6.8
(3) 		6.7
(2.9) 		3
(-1.8) 		5.5
(1.4) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6865
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.10 NCBI
Target Description Y39E4B.10 /REP_DB=WormBase Gene ID /WP=CE21721 /TR=Q9U2K2 /GB=CAB54431.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067315 NCBI Caenorhabditis elegans Y39E4B.10 (Y39E4B.10) mRNA, complete cds. 11/11 None
SNAP00000012014 ENSEMBL cdna:SNAP chromosome:CEL140:III:13142889:13164066:-1 10/11 None
GENEFINDER00000012023 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13142889:13152173:-1 10/11 None
Y39E4B.10 ENSEMBL cdna:known chromosome:CEL140:III:13142889:13152268:-1 gene:Y39E4B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13142884-13152190(-) 93.64 99.83
Public Domain and Genome References
Gene Title
Ensembl Y39E4B.10
Entrez Gene 189754 Entrez gene
SwissProt Q9U2K2 EMBL-EBI
WormBase CE21721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54431 Hypothetical protein Y39E4B.10 [Caenorhabditis elegans] ref|NP_499716.1| Y39E4B.10 [Caenorhabditis elegans] 0.0
blast CAE75080 Hypothetical protein CBG22998 [Caenorhabditis briggsae] 1.0E-172
blast CAB54431 Hypothetical protein Y39E4B.10 [Caenorhabditis elegans] ref|NP_499716.1| Y39E4B.10 [Caenorhabditis elegans] 1.0E-146
blast CAE75080 Hypothetical protein CBG22998 [Caenorhabditis briggsae] 2.0E-89
blast CAE75080 Hypothetical protein CBG22998 [Caenorhabditis briggsae] 2.0E-76
Sequence
Target Sequence 
>C. ELEGANS:184892_AT
taatcaaaaacctctacaccaacgcaatctgtgatagcgaaatgtttggagaggatggaa
tggaggttatcccacatacggtcggtgattcgacgaaattcattctcctcttctgggtcg
aagcttatctccagaaaattcaaattccaactcaaatgtctctttcaatattcaattttg
ccgtcttcctattttgccatgaagaacttgcaataacggaggaaaaagtacggaaacaca
ttggagaagtcatgttggatacggcatttactgtacttgaagaagcatccgaaagtgatt
tacgcggagaagttgggcagctattcagtgatattttggaacgacttgccgaactggagg
ttttgaacgaacgtgttccgctgtttttgatgaaatatttggataagattcgatgtgcag
aagattatgaaggatggaagggacgggttattgattgcaaatgctgcataatggatctcc
gcggacgtgtcgattggtacagtgtgaaaacgctcaaagaatcccgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCAAAAACCTCTACACCAACGC 72 635 1145 Antisense
GTTATCCCACATACGGTCGGTGATT 50 447 1210 Antisense
TTCGACGAAATTCATTCTCCTCTTC 554 693 1233 Antisense
TCTCCTCTTCTGGGTCGAAGCTTAT 227 611 1248 Antisense
ATTCCAACTCAAATGTCTCTTTCAA 447 7 1288 Antisense
ATATTCAATTTTGCCGTCTTCCTAT 196 19 1312 Antisense
GGAACGACTTGCCGAACTGGAGGTT 349 529 1482 Antisense
GAACGAACGTGTTCCGCTGTTTTTG 664 345 1509 Antisense
AATGCTGCATAATGGATCTCCGCGG 315 167 1604 Antisense
TCTCCGCGGACGTGTCGATTGGTAC 154 583 1620 Antisense
GAAAACGCTCAAAGAATCCCGCCAA 219 355 1650 Antisense
Sequence Source Affymetrix Proprietary Database