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[184891_at]

Description C39D10.5 /REP_DB=WormBase Gene ID /WP=CE27105 /TR=Q18526 /GB=AAK39210.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 84.4
(3)
A 		81.8
(2.8)
A 		19
(-3)
A 		43.8
(-0.7)
A 		65
B 82.3
(3)
A 		81
(2.9)
A 		13.4
(-3)
A 		28
(-1.7)
A 		69
C 76
(3)
A 		41.3
(-2)
A 		34.3
(-3)
A 		52.6
(-0.4)
A 		42
avr 80.9
(3) 		68
(1.7) 		22.2
(-3) 		41.5
(-1) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 119
(3)
A 		69.8
(0.4)
A 		69.4
(0.3)
A 		18.4
(-2.4)
A 		24
(-2.1)
A 		7.3
(-3)
A 		112
B 83.1
(3)
A 		56.9
(1)
A 		80.2
(2.8)
A 		3
(-3)
A 		24.2
(-1.4)
A 		24.2
(-1.4)
A 		80
C 47
(1.2)
A 		66.3
(3)
A 		51.8
(1.6)
A 		12.9
(-2.1)
A 		3.2
(-3)
A 		26.9
(-0.7)
A 		63
avr 83
(3) 		64.3
(1.4) 		67.1
(1.7) 		11.4
(-3) 		17.1
(-2.5) 		19.5
(-2.3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.7
(3)
A 		17.7
(-0)
A 		5
(-3)
A 		6.4
(-2.7)
A 		26
B 26.2
(3)
A 		20
(1.4)
A 		3.1
(-3)
A 		6
(-2.2)
A 		23
C 25.2
(3)
A 		11.9
(-1.9)
A 		12
(-1.9)
A 		8.9
(-3)
A 		16
avr 27.4
(3) 		16.5
(-0.2) 		6.7
(-3) 		7.1
(-2.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 21.9
(2.2)
A 		24.8
(3)
A 		15.1
(0.5)
A 		4.7
(-2.2)
A 		7.2
(-1.6)
A 		1.8
(-3)
A 		23
B 28.9
(3)
A 		18.9
(0.9)
A 		19.5
(1)
A 		0.8
(-3)
A 		9.8
(-1.1)
A 		9
(-1.2)
A 		28
C 17.4
(2.1)
A 		20.2
(3)
A 		13.2
(0.8)
A 		2.6
(-2.5)
A 		1
(-3)
A 		9
(-0.5)
A 		19
avr 22.7
(3) 		21.3
(2.6) 		15.9
(1) 		2.7
(-3) 		6
(-2) 		6.6
(-1.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17126
Sequence Type Exemplar sequence
Representative Public ID C39D10.5 NCBI
Target Description C39D10.5 /REP_DB=WormBase Gene ID /WP=CE27105 /TR=Q18526 /GB=AAK39210.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076930(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076930 NCBI Caenorhabditis elegans C39D10.5 (C39D10.5) mRNA, complete cds. 10/11 None
GENEFINDER00000015643 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7890435:7892333:-1 10/11 None
SNAP00000015636 ENSEMBL cdna:SNAP chromosome:CEL140:X:7891074:7892333:-1 10/11 None
C39D10.5 ENSEMBL cdna:known chromosome:CEL140:X:7890352:7892338:-1 gene:C39D10.5 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7891199-7892332(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39D10.5
Entrez Gene 181048 Entrez gene
SwissProt Q18526 EMBL-EBI
WormBase CE27105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39210 Hypothetical protein C39D10.5 [Caenorhabditis elegans] ref|NP_509331.1| C39D10.5 [Caenorhabditis elegans] 1.0E-105
blast T15784 hypothetical protein C39D10.5 - Caenorhabditis elegans 1.0E-102
blast AAK39210 Hypothetical protein C39D10.5 [Caenorhabditis elegans] ref|NP_509331.1| C39D10.5 [Caenorhabditis elegans] 1.0E-102
blast CAE70316 Hypothetical protein CBG16843 [Caenorhabditis briggsae] 5.0E-22
Sequence
Target Sequence 
>C. ELEGANS:184891_AT
tcatggcaccatacgtcacagaacttatggagttggcatttcgtgatgttcccggcatca
cagttgcggctggaattttgggagcatcacaagacgccgttaatggaactccactttctc
aagctgtaccggaaccagactctacccaaccagaagtggtttcttccactcaaccggatc
catcagctcagctcactggatcgagaaaaagaaagtcgtcatctccaaaaaagtgggatg
aactgcacaaaaagagtaaccatggaaacgagaccaaggaaagctctccggaaactgaca
aacattgctgcatgtttcaaatggctcatcaactagctcagaagtacggtgtgccaacac
cctacccaaatggaacggcgtctgctccaagactgatgatccagtaccccggattgccat
acatggttccagttaaccaggagttcaacaatattggaattcctagggaatgtgtcaagc
tctgtggaaacactgagttctgggtaagagttgaaaagatatctgactacagaaaacatt
tcttatgtgctactcgcaaactcagcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGGCACCATACGTCACAGAACT 206 623 77 Antisense
GAGTTGGCATTTCGTGATGTTCCCG 101 397 106 Antisense
CCGGCATCACAGTTGCGGCTGGAAT 124 265 128 Antisense
AAGACGCCGTTAATGGAACTCCACT 113 153 167 Antisense
ACTTTCTCAAGCTGTACCGGAACCA 126 103 189 Antisense
CATCAGCTCAGCTCACTGGATCGAG 80 213 257 Antisense
GAAAGCTCTCCGGAAACTGACAAAC 679 359 355 Antisense
GAAGTACGGTGTGCCAACACCCTAC 669 329 417 Antisense
ACCCAAATGGAACGGCGTCTGCTCC 362 87 440 Antisense
TACCCCGGATTGCCATACATGGTTC 191 649 481 Antisense
TGTGCTACTCGCAAACTCAGCTTTA 266 557 622 Antisense
Sequence Source Affymetrix Proprietary Database