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[184889_at] 7TM chemoreceptor, srw family

Description H10D18.3 /REP_DB=WormBase Gene ID /WP=CE23801 /TR=Q9N5N5 /GB=AAF39875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 27      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 14.8
(-1.9)
A 		50.4
(3)
A 		7.1
(-3)
A 		29.6
(0.1)
A 		43
B 4.2
(-3)
A 		7.3
(1.4)
A 		8.4
(3)
A 		4.8
(-2.1)
A 		4
C 17.8
(-1.4)
A 		7.2
(-2.9)
A 		6.5
(-3)
A 		47.6
(3)
A 		41
avr 12.3
(-1.5) 		21.6
(1.3) 		7.3
(-3) 		27.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10.7
(-2.1)
A 		2.4
(-3)
A 		56
(3)
A 		47.2
(2)
A 		6.7
(-2.5)
A 		4
(-2.8)
A 		54
B 23.5
(2)
A 		3.3
(-2.7)
A 		1.8
(-3)
A 		3.2
(-2.7)
A 		28.1
(3)
A 		14.8
(-0)
A 		26
C 6.4
(-2.1)
A 		2
(-3)
A 		7.9
(-1.7)
A 		30.5
(3)
A 		4.2
(-2.5)
A 		1.9
(-3)
A 		29
avr 13.5
(-0.3) 		2.6
(-3) 		21.9
(1.7) 		27
(3) 		13
(-0.4) 		6.9
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.4
(-0.7)
A 		10.9
(3)
A 		1.9
(-3)
A 		4.3
(-1.4)
A 		9
B 1.3
(-1)
A 		1.8
(2.3)
A 		1.9
(3)
A 		1
(-3)
A 		1
C 5.9
(0.9)
A 		2.1
(-3)
A 		2.3
(-2.8)
A 		8
(3)
A 		6
avr 4.2
(1.6) 		4.9
(3) 		2
(-3) 		4.4
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-2.4)
A 		0.8
(-3)
A 		12.2
(3)
A 		12
(2.9)
A 		2
(-2.4)
A 		1
(-2.9)
A 		11
B 8.2
(1.3)
A 		1.1
(-2.6)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		11.4
(3)
A 		5.5
(-0.2)
A 		11
C 2.4
(-1)
A 		0.6
(-3)
A 		2
(-1.5)
A 		6.1
(3)
A 		1.4
(-2.1)
A 		0.7
(-2.9)
A 		6
avr 4.2
(0.7) 		0.8
(-3) 		4.9
(1.5) 		6.3
(3) 		4.9
(1.5) 		2.4
(-1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14980
Sequence Type Exemplar sequence
Representative Public ID H10D18.3 NCBI
Target Description H10D18.3 /REP_DB=WormBase Gene ID /WP=CE23801 /TR=Q9N5N5 /GB=AAF39875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071653 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-6) (srw-6) mRNA, complete cds. 11/11 None
H10D18.3 ENSEMBL cdna:known chromosome:CEL140:V:3808450:3810522:1 gene:H10D18.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3808449-3810522(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-6
Ensembl H10D18.3
Entrez Gene 186715 Entrez gene
SwissProt Q9N5N5 EMBL-EBI
WormBase CE23801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39875 Serpentine receptor, class w protein 6 [Caenorhabditis elegans] ref|NP_504054.1| Serpentine Receptor, class W family member (srw-6) [Caenorhabditis elegans] 0.0
blast AAB54247 Serpentine receptor, class w protein 7 [Caenorhabditis elegans] ref|NP_504053.1| Serpentine Receptor, class W family member (srw-7) [Caenorhabditis elegans] 8.0E-74
blast CAE58134 Hypothetical protein CBG01222 [Caenorhabditis briggsae] 3.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504054.1 7 53-75,82-104,148-170,177-199,233-255,276-298,318-340
H10D18.3 7 53-75,82-104,148-170,177-199,233-255,276-298,318-340
Sequence
Target Sequence 
>C. ELEGANS:184889_AT
acactaattgcttgtactttgtggagtttaggctacttcgttcaagcgaaggtggtgaaa
tatatttccttttgtttttacggaaaacccacaagttatgaaaactattatcttgatggt
ggcacaaatgaaattattttcaaaattatcgacggttatatcggaatttgtgtaagcatc
ctatatattttggttaccatttttcttgttgtggaactacaaaaaaccaagcgtcgaaga
aaaaatttgcggaatgacaagcctaataacactagctcgtttgtaattgcaatggctatt
tcaacttttgcatcagaattcgcatacgggcttgtcttcacagtcgagcattttatattt
ggattcgaaatgtttcaaactctaaaaacactatttatgcatttgaactcaataactctt
ctcttcttaatggccagctcgttcagtcacatcttcgtttgcttcttcatgtcttctcag
taccgggacaccgtcaaaagattagtctggaccgagaaagaaaagaaaggaaaaactaaa
atatttgtaatggaaactacgacaaccctacctgctactatagactcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTAATTGCTTGTACTTTGTGGA 424 109 565 Antisense
GTGGAGTTTAGGCTACTTCGTTCAA 251 357 585 Antisense
GCATCCTATATATTTTGGTTACCAT 30 305 740 Antisense
ACAAGCCTAATAACACTAGCTCGTT 93 113 821 Antisense
CTAGCTCGTTTGTAATTGCAATGGC 53 225 836 Antisense
AGAATTCGCATACGGGCTTGTCTTC 634 75 879 Antisense
GGCTTGTCTTCACAGTCGAGCATTT 675 535 893 Antisense
GAACTCAATAACTCTTCTCTTCTTA 587 349 969 Antisense
TCTTAATGGCCAGCTCGTTCAGTCA 233 615 989 Antisense
TTCTCAGTACCGGGACACCGTCAAA 135 669 1038 Antisense
CCTACCTGCTACTATAGACTCTTCA 335 269 1131 Antisense
Sequence Source Affymetrix Proprietary Database