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[184888_at]

Description T08E11.2 /REP_DB=WormBase Gene ID /WP=CE19569 /TR=O76642 /GB=AAC26315.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 11      4grp_high_8_8 > 12      6grp_total > 13      4grp_total > 12      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 67.8
(-0.9)
P 		40.8
(-3)
A 		44.6
(-2.7)
P 		117.4
(3)
P 		77
B 88.4
(-0.4)
P 		63.5
(-1.6)
P 		36.6
(-3)
A 		155.5
(3)
P 		119
C 100
(-0.6)
P 		79.3
(-2)
P 		65.3
(-3)
P 		150.7
(3)
P 		85
avr 85.4
(-0.6) 		61.2
(-2.2) 		48.8
(-3) 		141.2
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 117.1
(1.9)
P 		78.6
(-0.9)
P 		131.3
(3)
P 		95
(0.3)
P 		63.3
(-2.1)
P 		50.8
(-3)
A 		81
B 93.3
(-1.1)
P 		152.7
(3)
P 		102.7
(-0.4)
P 		77
(-2.2)
P 		70.4
(-2.7)
P 		65.6
(-3)
P 		87
C 102.8
(-0.1)
P 		101.2
(-0.2)
P 		60.7
(-3)
P 		147
(3)
P 		81.4
(-1.6)
P 		69.9
(-2.4)
P 		86
avr 104.4
(2.2) 		110.8
(3) 		98.2
(1.4) 		106.3
(2.4) 		71.7
(-1.8) 		62.1
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 24.7
(3)
P 		8.9
(-3)
A 		11.6
(-2)
P 		17.2
(0.2)
P 		16
B 28.2
(1.8)
P 		15.7
(-1.2)
P 		8.5
(-3)
A 		33.1
(3)
P 		25
C 33.1
(3)
P 		22.8
(-3)
P 		22.8
(-3)
P 		25.4
(-1.5)
P 		10
avr 28.7
(3) 		15.8
(-2.4) 		14.3
(-3) 		25.2
(1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 21.6
(0.4)
P 		28
(2.8)
P 		28.6
(3)
P 		24.1
(1.3)
P 		19.1
(-0.5)
P 		12.4
(-3)
A 		16
B 32.5
(-0.6)
P 		50.8
(3)
P 		24.9
(-2.1)
P 		20.4
(-3)
P 		28.6
(-1.4)
P 		24.5
(-2.2)
P 		30
C 38.1
(3)
P 		30.9
(1.1)
P 		15.4
(-3)
P 		29.6
(0.8)
P 		26.4
(-0.1)
P 		23.4
(-0.9)
P 		23
avr 30.7
(0.9) 		36.6
(3) 		23
(-1.9) 		24.7
(-1.3) 		24.7
(-1.3) 		20.1
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5535
Sequence Type Exemplar sequence
Representative Public ID T08E11.2 NCBI
Target Description T08E11.2 /REP_DB=WormBase Gene ID /WP=CE19569 /TR=O76642 /GB=AAC26315.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061687 NCBI Caenorhabditis elegans T08E11.2 (T08E11.2) mRNA, complete cds. 11/11 None
SNAP00000018373 ENSEMBL cdna:SNAP chromosome:CEL140:II:1832520:1833439:1 10/11 None
GENEFINDER00000018379 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1826542:1833439:1 11/11 None
T08E11.2 ENSEMBL cdna:known chromosome:CEL140:II:1832356:1833503:1 gene:T08E11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1832354-1833438(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.2
Entrez Gene 173552 Entrez gene
SwissProt O76642 EMBL-EBI
WormBase CE19569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-177
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-176
blast AAC26316 Hypothetical protein T08E11.3 [Caenorhabditis elegans] ref|NP_494087.1| T08E11.3 [Caenorhabditis elegans] 1.0E-176
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-176
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-134
blast AAC26316 Hypothetical protein T08E11.3 [Caenorhabditis elegans] ref|NP_494087.1| T08E11.3 [Caenorhabditis elegans] 1.0E-128
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.3E-33
Pfam IPR002083 EMBL-EBI MATH 3.0E-35
Pfam IPR002083 EMBL-EBI MATH 5.2E-50
Pfam IPR002083 EMBL-EBI MATH 1.0E-43
Pfam IPR002083 EMBL-EBI MATH 1.4E-51
Pfam IPR002083 EMBL-EBI MATH 1.1E-45
Pfam IPR002083 EMBL-EBI MATH 2.3E-53
Pfam IPR002083 EMBL-EBI MATH 2.4E-48
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.9E-7
Pfam IPR002083 EMBL-EBI MATH 2.3E-53
Pfam IPR002083 EMBL-EBI MATH 2.4E-48
Sequence
Target Sequence 
>C. ELEGANS:184888_AT
ggttggattaattttctcagttggaaggaattggaaagtgattatgtagttgatgatagt
atcgtggttgaagcacatgttaagatcataaacattttggattctccgtgcactgaaaca
agggcccaaaaaacttttctgtttaatcacactgttcgaaatatttcaagaattaaaaaa
agaagtaactattacaccaatgtagaaacacatttcaaaattccttggaaaattcaaatt
caacgaattaatggattttttggagtgtttctacgatgtgaaaaacaacgatttgatagc
aaaagctgggctattgaagtggaatatgttctaacattgaagtcttcgaatggccaaaga
ttgtcattaacaggaactaccacgtttaacgagcccactggttacggttatgaaaaattc
attcgatgggatgatatggagagaaagtacgcgatcaacgacagcatcgtaattgaagct
cgagtcaaaattatgaagatgactggatttgaagatctgccacctaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGATTAATTTTCTCAGTTGGA 515 507 304 Antisense
CGTGCACTGAAACAAGGGCCCAAAA 60 1 410 Antisense
TTCTGTTTAATCACACTGTTCGAAA 26 695 440 Antisense
GAAACACATTTCAAAATTCCTTGGA 129 357 508 Antisense
GGATTTTTTGGAGTGTTTCTACGAT 522 509 556 Antisense
GTCATTAACAGGAACTACCACGTTT 606 467 666 Antisense
TACCACGTTTAACGAGCCCACTGGT 219 649 681 Antisense
GAGCCCACTGGTTACGGTTATGAAA 627 381 694 Antisense
GAAAGTACGCGATCAACGACAGCAT 334 361 746 Antisense
GACAGCATCGTAATTGAAGCTCGAG 171 369 763 Antisense
GGATTTGAAGATCTGCCACCTAATG 609 509 808 Antisense
Sequence Source Affymetrix Proprietary Database