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[184887_at]

Description F16G10.7 /REP_DB=WormBase Gene ID /WP=CE19396 /TR=O76592 /GB=AAC26275.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 9.7
(-2.8)
A 		6.4
(-3)
A 		16.1
(-2.3)
A 		89.1
(3)
A 		83
B 72.9
(0.9)
A 		21.8
(-3)
A 		100.5
(3)
A 		52.8
(-0.6)
A 		79
C 16.8
(-2.7)
A 		11.2
(-3)
A 		29.4
(-2)
A 		116.9
(3)
A 		106
avr 33.1
(-1.4) 		13.1
(-3) 		48.7
(-0.1) 		86.3
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 13.9
(3)
A 		10.3
(-0.2)
A 		8.9
(-1.5)
A 		9.1
(-1.3)
A 		11.3
(0.7)
A 		7.2
(-3)
A 		7
B 3.6
(-3)
A 		10.5
(-0.6)
A 		10.8
(-0.4)
A 		9.3
(-1)
A 		20.5
(3)
A 		4.9
(-2.5)
A 		17
C 6.6
(-3)
A 		11.1
(-2.5)
A 		10.2
(-2.6)
A 		10.9
(-2.5)
A 		63.1
(3)
A 		30.5
(-0.5)
A 		57
avr 8
(-3) 		10.6
(-2.3) 		10
(-2.5) 		9.8
(-2.5) 		31.6
(3) 		14.2
(-1.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.5
(-1.9)
A 		1.4
(-3)
A 		4.2
(-1.6)
A 		13
(3)
A 		12
B 23.2
(3)
A 		5.4
(-3)
A 		23.3
(3)
A 		11.3
(-1)
A 		18
C 5.6
(-2.1)
A 		3.2
(-3)
A 		10.3
(-0.4)
A 		19.7
(3)
A 		17
avr 10.8
(0.9) 		3.3
(-3) 		12.6
(1.9) 		14.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.6
(-0.3)
A 		3.7
(3)
A 		1.9
(-2.4)
A 		2.3
(-1.2)
A 		3.4
(2.1)
A 		1.7
(-3)
A 		2
B 1.2
(-3)
A 		3.5
(-1.1)
A 		2.6
(-1.8)
A 		2.5
(-1.9)
A 		8.3
(3)
A 		1.8
(-2.5)
A 		7
C 2.5
(-2.9)
A 		3.4
(-2.6)
A 		2.6
(-2.9)
A 		2.2
(-3)
A 		20.4
(3)
A 		10.2
(-0.4)
A 		18
avr 2.1
(-3) 		3.5
(-2) 		2.4
(-2.8) 		2.3
(-2.9) 		10.7
(3) 		4.6
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5530
Sequence Type Exemplar sequence
Representative Public ID F16G10.7 NCBI
Target Description F16G10.7 /REP_DB=WormBase Gene ID /WP=CE19396 /TR=O76592 /GB=AAC26275.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061860 NCBI Caenorhabditis elegans F16G10.7 (F16G10.7) mRNA, complete cds. 11/11 None
SNAP00000023117 ENSEMBL cdna:SNAP chromosome:CEL140:II:2379580:2380275:-1 11/11 None
F16G10.7 ENSEMBL cdna:known chromosome:CEL140:II:2379580:2380275:-1 gene:F16G10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023138 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2379578-2380274(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.7
Entrez Gene 184582 Entrez gene
SwissProt O76592 EMBL-EBI
WormBase CE19396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26275 Hypothetical protein F16G10.7 [Caenorhabditis elegans] ref|NP_494261.1| F16G10.7 [Caenorhabditis elegans] 5.0E-80
blast AAC26272 Hypothetical protein F16G10.4 [Caenorhabditis elegans] ref|NP_494257.1| F16G10.4 [Caenorhabditis elegans] 1.0E-25
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 8.8E-73
Sequence
Target Sequence 
>C. ELEGANS:184887_AT
aagtgtgcgaagccagttcggacgcgtgtcccaaattggaaactatgtttgatgccacac
cacagattgtcgaaatagatggttgtcaagacataacttgcccgggaaatgcagtaccat
atttggtagccacgttccctgcaagtgaaatcgaaccgttctacccaatggatgttgtta
acccatttaacgtcatacctccatctacaatatctggaagtgtaattgactattatggta
aaatttgtgatggtggtgtgtggaagtttacaaaatatccggatggcatccatgtaaacg
attcggacacgattatgggtgaagatggttcgttgactggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTGCGAAGCCAGTTCGGACGC 71 159 50 Antisense
GTTCGGACGCGTGTCCCAAATTGGA 446 293 65 Antisense
GTTTGATGCCACACCACAGATTGTC 78 453 96 Antisense
GGTTGTCAAGACATAACTTGCCCGG 242 505 130 Antisense
ACTTGCCCGGGAAATGCAGTACCAT 116 101 145 Antisense
ACCATATTTGGTAGCCACGTTCCCT 536 77 165 Antisense
AGCCACGTTCCCTGCAAGTGAAATC 231 83 177 Antisense
TCGAACCGTTCTACCCAATGGATGT 332 601 200 Antisense
TCATACCTCCATCTACAATATCTGG 663 619 242 Antisense
GATGGCATCCATGTAAACGATTCGG 236 407 331 Antisense
GGGTGAAGATGGTTCGTTGACTGGG 216 497 366 Antisense
Sequence Source Affymetrix Proprietary Database