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[184886_at]

Description Y39E4B.11 /REP_DB=WormBase Gene ID /WP=CE21722 /TR=Q9U2K9 /GB=CAB54423.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 2.9
(-3)
A 		6.7
(0.3)
A 		4.8
(-1.3)
A 		9.8
(3)
A 		7
B 6.3
(0.6)
A 		9.4
(3)
A 		2.8
(-2)
A 		1.5
(-3)
A 		8
C 3.9
(-2.2)
A 		23.2
(3)
A 		1.1
(-3)
A 		6.2
(-1.6)
A 		22
avr 4.4
(-2.1) 		13.1
(3) 		2.9
(-3) 		5.8
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 1.4
(-3)
A 		9.6
(-2)
A 		6.8
(-2.4)
A 		25.2
(-0.2)
A 		32.3
(0.6)
A 		52.8
(3)
A 		51
B 7
(-2.5)
A 		3.4
(-3)
A 		15.6
(-1.4)
A 		8.4
(-2.3)
A 		33.3
(0.9)
A 		49.5
(3)
A 		46
C 1.2
(-3)
A 		6.6
(-2.6)
A 		9.5
(-2.4)
A 		1.4
(-3)
A 		33
(-0.6)
A 		81.2
(3)
A 		80
avr 3.2
(-3) 		6.5
(-2.7) 		10.6
(-2.2) 		11.7
(-2.1) 		32.9
(0.1) 		61.2
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-3)
A 		1.4
(3)
A 		1.2
(0)
A 		1.4
(3)
A 		0
B 2
(2.1)
A 		2.3
(3)
A 		0.7
(-1.8)
A 		0.3
(-3)
A 		2
C 1.3
(-2.1)
A 		6.7
(3)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		6
avr 1.4
(-1.7) 		3.5
(3) 		0.8
(-3) 		0.9
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.3
(-3)
A 		3.4
(-1.5)
A 		1.5
(-2.4)
A 		6.4
(-0.1)
A 		9.7
(1.5)
A 		12.9
(3)
A 		13
B 2.4
(-2.6)
A 		1.1
(-3)
A 		3.8
(-2.1)
A 		2.2
(-2.6)
A 		13.5
(1.3)
A 		18.5
(3)
A 		17
C 0.5
(-3)
A 		2
(-2.6)
A 		2.4
(-2.5)
A 		0.3
(-3)
A 		10.7
(-0.7)
A 		27.2
(3)
A 		27
avr 1.1
(-3) 		2.2
(-2.6) 		2.6
(-2.5) 		3
(-2.4) 		11.3
(0.3) 		19.5
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7683
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.11 NCBI
Target Description Y39E4B.11 /REP_DB=WormBase Gene ID /WP=CE21722 /TR=Q9U2K9 /GB=CAB54423.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067322 NCBI Caenorhabditis elegans Y39E4B.11 (Y39E4B.11) mRNA, complete cds. 11/11 None
GENEFINDER00000012032 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13202878:13206862:1 11/11 None
Y39E4B.11 ENSEMBL cdna:known chromosome:CEL140:III:13204540:13206862:1 gene:Y39E4B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012020 6/11 Cross Hyb Matching Probes None
SNAP00000012021 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13204535-13206858(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39E4B.11
Entrez Gene 189755 Entrez gene
SwissProt Q9U2K9 EMBL-EBI
WormBase CE21722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54423 Hypothetical protein Y39E4B.11 [Caenorhabditis elegans] ref|NP_499723.1| Y39E4B.11 [Caenorhabditis elegans] 1.0E-141
blast CAB54423 Hypothetical protein Y39E4B.11 [Caenorhabditis elegans] ref|NP_499723.1| Y39E4B.11 [Caenorhabditis elegans] 1.0E-127
blast CAE75073 Hypothetical protein CBG22990 [Caenorhabditis briggsae] 1.0E-103
blast CAE56678 Hypothetical protein CBG24454 [Caenorhabditis briggsae] 1.0E-102
blast CAE75073 Hypothetical protein CBG22990 [Caenorhabditis briggsae] 1.0E-100
blast CAE56678 Hypothetical protein CBG24454 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:184886_AT
aacggtggacacttgttggcagctagtcttgattcgtgtacccgaacatccaaatgagac
tcacatcaaaacaatcaatgacgcaattacgagtgagatgaaagccacgtggaagatccc
ggccacttcgttcgcttacgtctccgcgccacacattccgattttgcagttggcttacgg
agttgcgaagaagcattttggggagaagaccgcgattcgatcaagcttcatgtttgcaga
gccgaagaacgataagtttctaatcgctaaggattcggacttgaagcatctcaaatatga
ggtgatccttggcgcgagccgcttctgttggacaaaagtggagactcacgcggaaatgtc
aaaacgaattgagtcgacactttttgaattgatgcgtgttcttccgaatcttgtcctttt
cctcggaccgctcgcgtttgacgttctctacgagacactcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGTGGACACTTGTTGGCAGCTA 308 143 165 Antisense
GCAGCTAGTCTTGATTCGTGTACCC 218 311 183 Antisense
TCGTGTACCCGAACATCCAAATGAG 140 605 198 Antisense
CGCCACACATTCCGATTTTGCAGTT 259 257 311 Antisense
AGACCGCGATTCGATCAAGCTTCAT 110 71 371 Antisense
CAAGCTTCATGTTTGCAGAGCCGAA 326 185 386 Antisense
AAGGATTCGGACTTGAAGCATCTCA 69 161 433 Antisense
ATATGAGGTGATCCTTGGCGCGAGC 644 19 459 Antisense
CGAGCCGCTTCTGTTGGACAAAAGT 696 247 479 Antisense
ATTGATGCGTGTTCTTCCGAATCTT 389 5 552 Antisense
TGACGTTCTCTACGAGACACTCGAG 189 571 603 Antisense
Sequence Source Affymetrix Proprietary Database