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[184885_at]

Description W10G11.2 /REP_DB=WormBase Gene ID /WP=CE14804 /TR=O44921 /GB=AAG24211.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1131
1 2 3 4 range
A 44.5
(-2.8)
A 		53.5
(-2.7)
A 		5.2
(-3)
A 		1136.3
(3)
P 		1131
B 47.8
(-2.8)
A 		46.8
(-2.8)
A 		6.2
(-3)
A 		1109.7
(3)
P 		1104
C 47.2
(-2.8)
A 		11.1
(-3)
A 		48.4
(-2.8)
A 		940
(3)
P 		929
avr 46.5
(-2.8) 		37.1
(-2.9) 		19.9
(-3) 		1062
(3) 		1042

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 56.2
(-0.3)
A 		11.3
(-2.6)
A 		4.4
(-3)
A 		6.7
(-2.9)
A 		35.7
(-1.4)
A 		119.2
(3)
A 		115
B 2.4
(-3)
A 		2.5
(-3)
A 		25.2
(-1.3)
A 		9.8
(-2.4)
A 		8.7
(-2.5)
A 		83
(3)
M 		81
C 35.1
(-1.3)
A 		27.3
(-1.8)
A 		11.2
(-2.7)
A 		4.9
(-3)
A 		21.7
(-2.1)
A 		113.2
(3)
P 		108
avr 31.2
(-1.5) 		13.7
(-2.6) 		13.6
(-2.6) 		7.1
(-3) 		22
(-2.1) 		105.1
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 16.2
(-2.5)
A 		11.6
(-2.6)
A 		1.4
(-3)
A 		166.3
(3)
P 		165
B 15.3
(-2.6)
A 		11.6
(-2.7)
A 		1.4
(-3)
A 		236.5
(3)
P 		235
C 15.6
(-2.5)
A 		3.2
(-3)
A 		16.9
(-2.5)
A 		158.5
(3)
P 		155
avr 15.7
(-2.7) 		8.8
(-2.9) 		6.6
(-3) 		187.1
(3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 10.4
(-1)
A 		4
(-2.4)
A 		1
(-3)
A 		1.7
(-2.9)
A 		10.8
(-0.9)
A 		29
(3)
A 		28
B 0.8
(-3)
A 		0.8
(-3)
A 		6.1
(-1.9)
A 		2.6
(-2.6)
A 		3.5
(-2.5)
A 		30.9
(3)
M 		30
C 13
(-1)
A 		8.3
(-1.8)
A 		2.8
(-2.7)
A 		1
(-3)
A 		7
(-2)
A 		37.9
(3)
P 		37
avr 8.1
(-1.8) 		4.4
(-2.5) 		3.3
(-2.7) 		1.8
(-3) 		7.1
(-2) 		32.6
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4715
Sequence Type Exemplar sequence
Representative Public ID W10G11.2 NCBI
Target Description W10G11.2 /REP_DB=WormBase Gene ID /WP=CE14804 /TR=O44921 /GB=AAG24211.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062174(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062174 NCBI Caenorhabditis elegans W10G11.2 (W10G11.2) mRNA, complete cds. 10/11 None
SNAP00000013257 ENSEMBL cdna:SNAP chromosome:CEL140:II:3560872:3561616:-1 10/11 None
GENEFINDER00000013280 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3560872:3561616:-1 11/11 None
W10G11.2 ENSEMBL cdna:known chromosome:CEL140:II:3560872:3561616:-1 gene:W10G11.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3560870-3561615(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.2
Entrez Gene 189336 Entrez gene
SwissProt O44921 EMBL-EBI
WormBase CE36028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24211 Hypothetical protein W10G11.2 [Caenorhabditis elegans] ref|NP_494575.2| W10G11.2 [Caenorhabditis elegans] 1.0E-110
blast AAG24211 Hypothetical protein W10G11.2 [Caenorhabditis elegans] ref|NP_494575.2| W10G11.2 [Caenorhabditis elegans] 1.0E-108
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 6.0E-64
blast AAG24226 Hypothetical protein W10G11.1 [Caenorhabditis elegans] ref|NP_494574.1| W10G11.1 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.7E-52
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.1E-51
Sequence
Target Sequence 
>C. ELEGANS:184885_AT
tgtaccaaaggcccagaacctacaaaatgcttggaggtaagttatgtggtcttgaatgga
agatgttattcgaaactgttatcactgagacttttgtatgttagattgaaagagaagctt
agatatcgaacattgaatttaaacaattttttctcacaggttttaaaacaaattgctata
aactcgaaagaattcgatatttccaacaagacaagcgccaagacagtgattgaaaactgt
gaaaagttcaaccattgccatcacactctcgactgccttaccgaagaaaaatttgtctac
gttgtcaacgtaactttcatgttttgcgattacgttcagtttttttccggaccctttgtc
ccctgtcagactacgattgaggctaaagtttccgagtgcaataagaactggaatcccttc
ccaaaagagactccggatcaggagaaaatggctgaggttcggaaaacggcatgtgacaac
tttttcggaaaagataattgcatgcagaaggagatcacggagatttgcggagcagagatg
tggaacgggttccggaagttatattataatttgcagattctgctcgcactcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACCAAAGGCCCAGAACCTACAA 412 553 82 Antisense
TTCCAACAAGACAAGCGCCAAGACA 646 699 282 Antisense
CTCTCGACTGCCTTACCGAAGAAAA 479 231 347 Antisense
ACGTTGTCAACGTAACTTTCATGTT 262 93 380 Antisense
TGCGATTACGTTCAGTTTTTTTCCG 188 529 406 Antisense
TTGTCCCCTGTCAGACTACGATTGA 702 697 437 Antisense
GAGGCTAAAGTTTCCGAGTGCAATA 578 405 460 Antisense
TGGAATCCCTTCCCAAAAGAGACTC 504 545 490 Antisense
AACGGCATGTGACAACTTTTTCGGA 282 143 546 Antisense
GATCACGGAGATTTGCGGAGCAGAG 648 421 594 Antisense
TTTGCAGATTCTGCTCGCACTCAAC 684 667 651 Antisense
Sequence Source Affymetrix Proprietary Database