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[184884_s_at]

Description C01B10.9 /REP_DB=WormBase Gene ID /WP=CE06740 /TR=Q17540 /GB=AAC47919.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 71      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_total > 72      4grp_total > 31      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 466.3
(3)
P 		306.6
(-1.6)
P 		259.1
(-3)
P 		317.1
(-1.3)
P 		207
B 461.1
(3)
P 		215.6
(-3)
P 		271.5
(-1.6)
P 		370.6
(0.8)
P 		246
C 535.8
(3)
P 		308.5
(-1.9)
P 		257.4
(-3)
P 		416.9
(0.4)
P 		278
avr 487.7
(3) 		276.9
(-2.6) 		262.7
(-3) 		368.2
(-0.2) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 141.9
(-3)
A 		366.9
(2)
P 		363.5
(1.9)
P 		413.7
(3)
P 		305.9
(0.6)
P 		292.6
(0.3)
P 		272
B 315
(-2.7)
P 		374.4
(-0.2)
P 		441.2
(2.6)
P 		307.8
(-3)
P 		451.7
(3)
P 		317.5
(-2.6)
P 		144
C 325.5
(-2.7)
P 		340.8
(-2)
P 		331.6
(-2.4)
P 		453.9
(3)
P 		317.8
(-3)
P 		333.2
(-2.3)
P 		136
avr 260.8
(-3) 		360.7
(1.6) 		378.8
(2.4) 		391.8
(3) 		358.5
(1.5) 		314.4
(-0.5) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 169.8
(3)
P 		66.6
(-2)
P 		67.7
(-2)
P 		46.4
(-3)
P 		123
B 147
(3)
P 		53.2
(-3)
P 		62.9
(-2.4)
P 		79
(-1.3)
P 		94
C 177.4
(3)
P 		88.7
(-2)
P 		89.7
(-1.9)
P 		70.3
(-3)
P 		107
avr 164.7
(3) 		69.5
(-2.7) 		73.4
(-2.5) 		65.2
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 26.2
(-3)
A 		130.5
(3)
P 		79.2
(0)
P 		104.9
(1.5)
P 		92.3
(0.8)
P 		71.2
(-0.4)
P 		104
B 109.6
(-1.3)
P 		124.6
(-0.5)
P 		107.1
(-1.5)
P 		81.5
(-3)
P 		183.5
(3)
P 		118.4
(-0.8)
P 		102
C 120.7
(3)
P 		104
(0.2)
P 		84.4
(-3)
P 		91.3
(-1.9)
P 		102.8
(0)
P 		111.5
(1.5)
P 		36
avr 85.5
(-3) 		119.7
(2) 		90.2
(-2.3) 		92.6
(-2) 		126.2
(3) 		100.4
(-0.8) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184884_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10708
Sequence Type Exemplar sequence
Representative Public ID C01B10.9 NCBI
Target Description C01B10.9 /REP_DB=WormBase Gene ID /WP=CE06740 /TR=Q17540 /GB=AAC47919.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068622 NCBI Caenorhabditis elegans C01B10.9 (C01B10.9) mRNA, complete cds. 11/11 None
SNAP00000026860 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6632240:6634676:1 11/11 None
GENEFINDER00000026875 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6632240:6634676:1 11/11 None
C01B10.9 ENSEMBL cdna:known chromosome:CEL140:IV:6632206:6634956:1 gene:C01B10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6632245-6634682(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B10.9
Entrez Gene 177430 Entrez gene
SwissProt Q17540 EMBL-EBI
WormBase CE37181 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3946.1.S1_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) cfa
CHICKEN:GGAAFFX.10691.2.S1_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) gga
CHICKEN:GGAAFFX.12263.1.S1_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) gga
HG-U133_PLUS_2:204161_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-U133A:204161_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-FOCUS:204161_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-U133A_2:204161_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-U133_PLUS_2:204160_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-U133A_2:204160_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-U133A:204160_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HU35KSUBC:RC_AA452036_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HU35KSUBC:RC_AA280031_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HU35KSUBD:RC_AA281535_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
U133_X3P:HS.54037.0.S1_3P_A_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
HG-U95AV2:36459_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) hs
MOUSE430A_2:1452639_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MOUSE430_2:1452639_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MOE430A:1452639_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MG-U74BV2:107311_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MG-U74BV2:116771_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MG-U74BV2:111999_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MOE430B:1434580_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
MOUSE430_2:1434580_AT ectonucleotide pyrophosphatase/phosphodiesterase 4 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9117 nucleotide metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47919 Hypothetical protein C01B10.9 [Caenorhabditis elegans] ref|NP_501023.3| C01B10.9 [Caenorhabditis elegans] 0.0
blast CAE61493 Hypothetical protein CBG05390 [Caenorhabditis briggsae] 0.0
blast AAH79717 MGC82144 protein [Xenopus laevis] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.8E-119
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 2.4E-97
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 9.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501023.3 1 446-468
C01B10.9 1 446-468
SNAP00000026860 1 446-468
GENEFINDER00000026875 1 505-527
Sequence
Target Sequence 
>C. ELEGANS:184884_S_AT
aattcaattcatcaactcacggacaagatcctgatcgtccagagatgagagctttcctta
ttatgagaggcccagcgttttctgaaaattatacgattgccgatattccttcaaatgtgg
atttgtacaatataatgtgtcatgtgcttggtatcacaccaactgaaaataatggaacca
tggaaattgtgaaacgagctttaaaagagaacagatatttaccaatgacacatggtttcg
tatttaatcagattacggattcatggagtttttcgcttattttaattccttcaatgtgta
ttgttataatattcttcgcttatggatgtaagaataccgtactcaaatctgatcccaatt
ggggaagatccgatacagttcaaggatatcggccattgagtaaccggacgaacgaaggat
tcgaattaaatgatgatgaggatgaggatgaaggagatggattaaggaattcgatagatt
tagaaagaggtggaagaaggagtcaagcaggaggtggtgcacttggaagtctgaacaatg
gaacggtagcaatgtctggact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAATTCATCAACTCACGGACA 411 175 1265 Antisense
ACTCACGGACAAGATCCTGATCGTC 232 101 1279 Antisense
GTCCAGAGATGAGAGCTTTCCTTAT 71 477 1301 Antisense
ATGAGAGGCCCAGCGTTTTCTGAAA 40 47 1327 Antisense
GTGTCATGTGCTTGGTATCACACCA 272 487 1401 Antisense
ATGACACATGGTTTCGTATTTAATC 136 45 1489 Antisense
ACGGATTCATGGAGTTTTTCGCTTA 433 95 1519 Antisense
TTTCGCTTATTTTAATTCCTTCAAT 374 671 1535 Antisense
ATACCGTACTCAAATCTGATCCCAA 402 23 1598 Antisense
GGCCATTGAGTAACCGGACGAACGA 246 541 1655 Antisense
ATGGAACGGTAGCAATGTCTGGACT 114 53 1802 Antisense
Sequence Source Affymetrix Proprietary Database