[Home] | [Total List]

[184883_s_at]

Description F49C12.15 /REP_DB=WormBase Gene ID /WP=CE03375 /TR=O01262 /GB=CAA92493.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 9.2
(-2.9)
A 		8.3
(-3)
A 		10.3
(-2.7)
A 		48.4
(3)
A 		40
B 10.8
(-2.9)
A 		11
(-2.8)
A 		10.4
(-3)
A 		27.1
(3)
A 		17
C 44.4
(-0.4)
A 		10.2
(-3)
A 		32.2
(-1.3)
A 		88.6
(3)
A 		78
avr 21.5
(-1.4) 		9.8
(-3) 		17.6
(-2) 		54.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 7.4
(-3)
A 		25.5
(-2.7)
A 		23.9
(-2.7)
A 		55.2
(-2.2)
A 		180.1
(-0.2)
P 		371.6
(3)
P 		364
B 6.8
(-3)
A 		13.2
(-2.8)
A 		5.6
(-3)
A 		70.6
(-1.7)
A 		144.8
(-0.2)
P 		303.7
(3)
P 		298
C 7.1
(-3)
A 		7.7
(-3)
A 		13.4
(-2.9)
A 		77.1
(-1.6)
A 		172.3
(0.3)
P 		304.5
(3)
P 		297
avr 7.1
(-3) 		15.5
(-2.8) 		14.3
(-2.9) 		67.6
(-1.9) 		165.7
(-0) 		326.6
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.3
(-1.3)
A 		1.8
(-3)
A 		2.7
(-2)
A 		7.1
(3)
A 		5
B 3.5
(-1.1)
A 		2.7
(-2.5)
A 		2.4
(-3)
A 		5.8
(3)
A 		3
C 14.7
(2.9)
A 		2.9
(-3)
A 		11.2
(1.2)
A 		14.9
(3)
A 		12
avr 7.2
(1.1) 		2.5
(-3) 		5.4
(-0.4) 		9.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 1.4
(-3)
A 		9.1
(-2.5)
A 		5.2
(-2.7)
A 		14
(-2.2)
A 		54.3
(0.6)
P 		90.5
(3)
P 		89
B 2.4
(-2.9)
A 		4.4
(-2.8)
A 		1.4
(-3)
A 		18.7
(-2.1)
A 		58.8
(0.1)
P 		113.3
(3)
P 		112
C 2.6
(-3)
A 		2.4
(-3)
A 		3.4
(-2.9)
A 		15.5
(-2.2)
A 		55.8
(0.2)
P 		101.9
(3)
P 		100
avr 2.1
(-3) 		5.3
(-2.8) 		3.3
(-2.9) 		16.1
(-2.2) 		56.3
(0.3) 		101.9
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184883_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9807
Sequence Type Exemplar sequence
Representative Public ID F49C12.15 NCBI
Target Description F49C12.15 /REP_DB=WormBase Gene ID /WP=CE03375 /TR=O01262 /GB=CAA92493.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069237 NCBI Caenorhabditis elegans F49C12.15 (F49C12.15) mRNA, complete cds. 11/11 A 
SNAP00000040154 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9326687:9327427:1 11/11 None
GENEFINDER00000040168 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9326654:9327427:1 11/11 None
F49C12.15 ENSEMBL cdna:known chromosome:CEL140:IV:9324419:9327484:1 gene:F49C12.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9324453-9327433(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.15
Entrez Gene 177759 Entrez gene
SwissProt O01262 EMBL-EBI
WormBase CE03375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92521 Hypothetical protein F49C12.15 [Caenorhabditis elegans] emb|CAA92493.1| Hypothetical protein F49C12.15 [Caenorhabditis elegans] ref|NP_501638.1| F49C12.15 [Caenorhabditis elegans] 0.0
blast CAE56845 Hypothetical protein CBG24672 [Caenorhabditis briggsae] 0.0
blast CAA92521 Hypothetical protein F49C12.15 [Caenorhabditis elegans] emb|CAA92493.1| Hypothetical protein F49C12.15 [Caenorhabditis elegans] ref|NP_501638.1| F49C12.15 [Caenorhabditis elegans] 1.0E-105
blast CAA92521 Hypothetical protein F49C12.15 [Caenorhabditis elegans] emb|CAA92493.1| Hypothetical protein F49C12.15 [Caenorhabditis elegans] ref|NP_501638.1| F49C12.15 [Caenorhabditis elegans] 3.0E-98
blast CAE56845 Hypothetical protein CBG24672 [Caenorhabditis briggsae] 1.0E-56
blast CAE56845 Hypothetical protein CBG24672 [Caenorhabditis briggsae] 5.0E-53
Sequence
Target Sequence 
>C. ELEGANS:184883_S_AT
gaacgtgttgcagcttctactggtcccagatctgcttcaaaatctccaaaaggaacactt
cgcgtgaaggaaactaaagtcattcgtgaagttcgccaagaagatggaaagccacctgag
attagtgagaagaaagaagaaactgtgaaagaggaaaaagtgaatctgagtgagagattg
agagccagatcgagagcttcatctcctgcaactccaactttgaagagaacattcaatcag
acggatgagtcgaatattgtgactttgagtgcagtcaaagaaacccatcaaactttggaa
atgacaccaatcaaagtgaattctgaaacagttccttcaacttcttatggacaacgtgct
ttccctgagagtgttcaattggatatgctcattgacaagaaacgacttgtgcttaatgtt
aatttcatgcttcttgctgaaaaacatccagaagttgaaattcttggtttcacattcaaa
ggacaaaagttgtgggaaaagagctcagaatggaatctcacaagtgcaaatactactagt
catactaaaacaattgctcgtcaagccagtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTGTTGCAGCTTCTACTGGTC 118 349 2008 Antisense
TACTGGTCCCAGATCTGCTTCAAAA 373 647 2025 Antisense
TCTCCAAAAGGAACACTTCGCGTGA 500 607 2050 Antisense
AAGTCATTCGTGAAGTTCGCCAAGA 59 159 2084 Antisense
CAGATCGAGAGCTTCATCTCCTGCA 455 203 2193 Antisense
TCTCCTGCAACTCCAACTTTGAAGA 313 611 2209 Antisense
GAAACAGTTCCTTCAACTTCTTATG 107 357 2332 Antisense
CTTATGGACAACGTGCTTTCCCTGA 59 223 2351 Antisense
GTGCTTTCCCTGAGAGTGTTCAATT 256 479 2363 Antisense
ATGTTAATTTCATGCTTCTTGCTGA 536 47 2423 Antisense
AACAATTGCTCGTCAAGCCAGTAAC 619 133 2556 Antisense
Sequence Source Affymetrix Proprietary Database