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[184882_at]

Description C17C3.11 /REP_DB=WormBase Gene ID /WP=CE04031 /TR=Q18055 /GB=AAK31424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 22.8
(-3)
A 		70.2
(3)
A 		39.6
(-0.9)
A 		61.2
(1.9)
A 		47
B 14.6
(-3)
A 		65.9
(3)
A 		33.7
(-0.8)
A 		41.8
(0.2)
A 		51
C 29.7
(-0.5)
A 		51
(3)
A 		14.4
(-3)
A 		25.1
(-1.2)
A 		37
avr 22.4
(-3) 		62.4
(3) 		29.2
(-2) 		42.7
(0) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 42.4
(3)
A 		40.6
(2.7)
A 		39.4
(2.4)
A 		12.4
(-2.8)
A 		11.4
(-3)
A 		38
(2.1)
A 		31
B 41.9
(2.1)
A 		48.4
(3)
A 		33.5
(0.9)
A 		43.2
(2.3)
A 		32.9
(0.8)
A 		6.2
(-3)
A 		42
C 34.9
(-0.7)
A 		64.4
(2.3)
A 		71.9
(3)
A 		33.7
(-0.8)
A 		47
(0.5)
A 		11.7
(-3)
A 		60
avr 39.7
(0.9) 		51.1
(3) 		48.3
(2.5) 		29.8
(-0.9) 		30.4
(-0.8) 		18.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.3
(-3)
A 		15.2
(3)
A 		10.4
(-1.2)
A 		9
(-2.4)
A 		7
B 4.7
(-3)
A 		16.3
(3)
A 		7.8
(-1.4)
A 		8.9
(-0.8)
A 		12
C 9.8
(0.2)
A 		14.7
(3)
A 		5
(-2.5)
A 		4.2
(-3)
A 		11
avr 7.6
(-2.9) 		15.4
(3) 		7.7
(-2.8) 		7.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.8
(-0.6)
A 		14.5
(3)
A 		8.6
(-0.1)
A 		3.2
(-3)
A 		3.4
(-2.9)
A 		9.2
(0.2)
A 		11
B 14.6
(2.3)
A 		16.1
(3)
A 		8.1
(-0.5)
A 		11.4
(1)
A 		13.4
(1.8)
A 		2.3
(-3)
A 		14
C 12.9
(0.4)
A 		19.6
(3)
A 		18.3
(2.5)
A 		6.8
(-1.9)
A 		15.2
(1.3)
A 		3.9
(-3)
A 		16
avr 11.8
(0.5) 		16.7
(3) 		11.7
(0.4) 		7.1
(-2) 		10.7
(-0.1) 		5.1
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4390
Sequence Type Exemplar sequence
Representative Public ID C17C3.11 NCBI
Target Description C17C3.11 /REP_DB=WormBase Gene ID /WP=CE04031 /TR=Q18055 /GB=AAK31424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062663 NCBI Caenorhabditis elegans C17C3.11 (C17C3.11) mRNA, complete cds. 11/11 None
GENEFINDER00000005305 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5537805:5538996:1 11/11 None
C17C3.11 ENSEMBL cdna:known chromosome:CEL140:II:5537805:5538974:1 gene:C17C3.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005285 6/11 Cross Hyb Matching Probes None
SNAP00000005286 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5537802-5538994(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17C3.11
Entrez Gene 182720 Entrez gene
SwissProt Q18055 EMBL-EBI
WormBase CE34696 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB18314 Hypothetical protein K11C4.1 [Caenorhabditis elegans] ref|NP_504751.1| K11C4.1 [Caenorhabditis elegans] 3.0E-99
blast AAK31424 Hypothetical protein C17C3.11 [Caenorhabditis elegans] ref|NP_495064.2| C17C3.11 [Caenorhabditis elegans] 4.0E-90
blast CAE67695 Hypothetical protein CBG13263 [Caenorhabditis briggsae] 9.0E-89
blast CAE64559 Hypothetical protein CBG09309 [Caenorhabditis briggsae] 1.0E-88
blast AAB18314 Hypothetical protein K11C4.1 [Caenorhabditis elegans] ref|NP_504751.1| K11C4.1 [Caenorhabditis elegans] 6.0E-38
blast CAE64559 Hypothetical protein CBG09309 [Caenorhabditis briggsae] 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:184882_AT
aaggtatctgagaagtcgcccagccacatgcctactctcattgacaagggacgccatgac
aactttaactatattgtcatgaagcttcttgggaaatccctgcaagatgctataaagact
gggcctgatggtcatttgacatttgggctctgcgattggggcatcgtttcaatgcttgga
agcattggaagatttgcattggagttctacatgctcgtcgatttcaccaatgcagctctt
ccctggaaaaatgtaaatgagattggcgagattggtgcgatgaagaagaattcccgcttc
caaccgatcatgggccaattccttgctggctgcccagatgaatttcgcttgattatgaac
tatatcgacagtctttcgttcttcaaggagcccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTATCTGAGAAGTCGCCCAGCC 530 159 208 Antisense
ACATGCCTACTCTCATTGACAAGGG 697 103 233 Antisense
GGGACGCCATGACAACTTTAACTAT 592 493 255 Antisense
AAGACTGGGCCTGATGGTCATTTGA 595 153 322 Antisense
GGTCATTTGACATTTGGGCTCTGCG 587 503 337 Antisense
GCTCTGCGATTGGGGCATCGTTTCA 284 299 354 Antisense
ATTGGAGTTCTACATGCTCGTCGAT 691 3 405 Antisense
TGCTCGTCGATTTCACCAATGCAGC 177 581 419 Antisense
ACCGATCATGGGCCAATTCCTTGCT 297 83 510 Antisense
CTGGCTGCCCAGATGAATTTCGCTT 366 241 533 Antisense
GTCTTTCGTTCTTCAAGGAGCCCGA 427 469 578 Antisense
Sequence Source Affymetrix Proprietary Database