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[184881_s_at]

Description T23E7.2C /REP_DB=WormBase Gene ID /WP=CE24007 /TR=O17338 /GB=AAB71258.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 212.4
(0.1)
A 		333.5
(3)
P 		204
(-0.1)
A 		81
(-3)
A 		253
B 115
(-3)
A 		254.2
(3)
A 		232
(2)
P 		124
(-2.6)
A 		139
C 203.4
(1.3)
P 		269.1
(3)
A 		223.6
(1.8)
P 		38.3
(-3)
A 		231
avr 176.9
(-0.2) 		285.6
(3) 		219.9
(1.1) 		81.1
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 206.9
(-0.7)
A 		301.8
(3)
P 		145.8
(-3)
A 		264.2
(1.6)
M 		231.3
(0.3)
A 		247.2
(0.9)
A 		156
B 214.5
(0.1)
P 		299.7
(3)
P 		245.6
(1.2)
A 		128.8
(-2.7)
A 		120.4
(-3)
P 		154.8
(-1.8)
P 		179
C 175.8
(-0.9)
P 		292.4
(3)
A 		189
(-0.5)
M 		112.8
(-3)
A 		196.7
(-0.2)
A 		144.5
(-1.9)
A 		180
avr 199.1
(-1.6) 		298
(3) 		193.5
(-1.8) 		168.6
(-3) 		182.8
(-2.3) 		182.2
(-2.4) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 77.3
(3)
A 		72.4
(2.6)
P 		53.3
(0.8)
A 		11.9
(-3)
A 		65
B 36.7
(-1.3)
A 		62.8
(3)
A 		53.8
(1.5)
P 		26.4
(-3)
A 		36
C 67.3
(2.1)
P 		77.4
(3)
A 		77.9
(3)
P 		6.5
(-3)
A 		71
avr 60.4
(1.9) 		70.9
(3) 		61.7
(2) 		14.9
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 38.1
(-2.5)
A 		107.4
(3)
P 		31.7
(-3)
A 		67
(-0.2)
M 		69.8
(0)
A 		60.2
(-0.7)
A 		76
B 74.6
(0.7)
P 		99.8
(3)
P 		59.6
(-0.7)
A 		34.1
(-3)
A 		48.9
(-1.6)
P 		57.7
(-0.8)
P 		66
C 65.1
(0.8)
P 		89.2
(3)
A 		48.1
(-0.7)
M 		22.7
(-3)
A 		63.6
(0.7)
A 		48.4
(-0.7)
A 		67
avr 59.3
(-1.1) 		98.8
(3) 		46.5
(-2.5) 		41.3
(-3) 		60.8
(-1) 		55.4
(-1.5) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184881_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17756
Sequence Type Exemplar sequence
Representative Public ID T23E7.2C NCBI
Target Description T23E7.2C /REP_DB=WormBase Gene ID /WP=CE24007 /TR=O17338 /GB=AAB71258.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078452 NCBI Caenorhabditis elegans T23E7.2c (T23E7.2) mRNA, complete cds. 11/11 None
T23E7.2c ENSEMBL cdna:known chromosome:CEL140:X:17670951:17680305:1 gene:T23E7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038224 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181789 5 1 NM_078451 176362_s_at (11)
NM_078452 184881_s_at (11)
NM_078453 173056_at (11), 176362_s_at (11)
NM_078454 173056_at (11), 184427_s_at (11)
NM_171823 173056_at (11), 176362_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17670949-17680304(+) 98.38 100.0
Public Domain and Genome References
Ensembl T23E7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47129 Hypothetical protein T23E7.2c [Caenorhabditis elegans] ref|NP_510853.1| T23E7.2c [Caenorhabditis elegans] 1.0E-150
blast AAB71257 Hypothetical protein T23E7.2a [Caenorhabditis elegans] ref|NP_510852.1| T23E7.2a [Caenorhabditis elegans] 6.0E-87
blast AAM69068 Hypothetical protein T23E7.2e [Caenorhabditis elegans] ref|NP_741957.1| T23E7.2e [Caenorhabditis elegans] 6.0E-87
Sequence
Target Sequence 
>C. ELEGANS:184881_S_AT
attgacttggtctagtccagcagcaaccaggagccagctctcaattgccccaagatctca
ttcttcgccccccattcatccaaatatatctataactatgtatctcttctcgaaaaagcg
tatattcagacaaaaattcgaccttggacgcatcggacaactcgaaagatcgctgtctcg
tgaggtgatccagaaagacagattgcgcaccgaataccaacaactgtcgacaaaacttga
ccaggcgtgccgtcaaatggaattgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGACTTGGTCTAGTCCAGCAGCA 698 1 2175 Antisense
GTCTAGTCCAGCAGCAACCAGGAGC 477 469 2184 Antisense
AACCAGGAGCCAGCTCTCAATTGCC 242 147 2199 Antisense
CAATTGCCCCAAGATCTCATTCTTC 655 179 2216 Antisense
CTATAACTATGTATCTCTTCTCGAA 693 223 2264 Antisense
GTATCTCTTCTCGAAAAAGCGTATA 206 453 2274 Antisense
AATTCGACCTTGGACGCATCGGACA 263 177 2309 Antisense
GCGCACCGAATACCAACAACTGTCG 77 289 2379 Antisense
ATACCAACAACTGTCGACAAAACTT 467 1 2388 Antisense
GACAAAACTTGACCAGGCGTGCCGT 489 363 2403 Antisense
GGCGTGCCGTCAAATGGAATTGCTC 619 541 2418 Antisense
Sequence Source Affymetrix Proprietary Database