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[184880_at]

Description F48A11.2 /REP_DB=WormBase Gene ID /WP=CE10724 /TR=O17367 /GB=AAB71284.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1
(-3)
A 		1.6
(-2.8)
A 		5.2
(-1.7)
A 		21.1
(3)
A 		20
B 4.4
(-3)
A 		5
(-2.7)
A 		5
(-2.7)
A 		17
(3)
A 		13
C 2.2
(-3)
A 		3.2
(-2.8)
A 		5.5
(-2.4)
A 		35.1
(3)
A 		33
avr 2.5
(-3) 		3.3
(-2.8) 		5.2
(-2.3) 		24.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 22.3
(3)
A 		1.5
(-2.9)
A 		1.8
(-2.8)
A 		2.7
(-2.5)
A 		1
(-3)
A 		2
(-2.7)
A 		21
B 0.7
(-3)
A 		2.2
(-2)
A 		1.7
(-2.3)
A 		0.7
(-3)
A 		9.7
(3)
A 		0.8
(-2.9)
A 		9
C 1.1
(-3)
A 		1.8
(-2.8)
A 		1.3
(-2.9)
A 		20.9
(3)
A 		6.5
(-1.4)
A 		2.6
(-2.5)
A 		20
avr 8
(2.9) 		1.8
(-2.8) 		1.6
(-3) 		8.1
(3) 		5.7
(0.8) 		1.8
(-2.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-2.8)
A 		0.3
(-3)
A 		1.4
(-0.6)
A 		3.1
(3)
A 		3
B 1.4
(-2.5)
A 		1.2
(-3)
A 		1.2
(-3)
A 		3.6
(3)
A 		2
C 0.7
(-3)
A 		0.9
(-2.8)
A 		1.9
(-1.6)
A 		5.9
(3)
A 		5
avr 0.8
(-3) 		0.8
(-3) 		1.5
(-1.8) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.1
(3)
A 		0.5
(-2.7)
A 		0.4
(-2.8)
A 		0.7
(-2.4)
A 		0.3
(-3)
A 		0.5
(-2.7)
A 		4
B 0.3
(-2.8)
A 		0.7
(-2.2)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		3.9
(3)
A 		0.3
(-2.8)
A 		4
C 0.4
(-2.8)
A 		0.6
(-2.5)
A 		0.3
(-3)
A 		4.2
(3)
A 		2.1
(-0.2)
A 		0.9
(-2.1)
A 		4
avr 1.6
(1.2) 		0.6
(-2.3) 		0.4
(-3) 		1.7
(1.6) 		2.1
(3) 		0.6
(-2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5450
Sequence Type Exemplar sequence
Representative Public ID F48A11.2 NCBI
Target Description F48A11.2 /REP_DB=WormBase Gene ID /WP=CE10724 /TR=O17367 /GB=AAB71284.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061280 NCBI Caenorhabditis elegans F48A11.2 (F48A11.2) mRNA, complete cds. 11/11 None
SNAP00000036184 ENSEMBL cdna:SNAP chromosome:CEL140:II:198916:201562:1 11/11 None
F48A11.2 ENSEMBL cdna:known chromosome:CEL140:II:198916:200226:1 gene:F48A11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036193 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F48A11.2
Entrez Gene 185960 Entrez gene
WormBase CE36855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493681 F48A11.2 [Caenorhabditis elegans] 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:184880_AT
gatgaagcagttgcctcatcttccggtgtgacttttgatcctaatcagaacgcatctgat
tcgaaacatattccaactacgaaaacgactacagttgtgaactcgacacttccgaaatcg
acaacgaaacatgaaaagaccgaaatggatcgaacgatggatcgtcgcgatcgcgatgac
aatcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAAGCAGTTGCCTCATCTTCCG 87 413 19 Antisense
CTCATCTTCCGGTGTGACTTTTGAT 371 227 33 Antisense
TCCGGTGTGACTTTTGATCCTAATC 90 595 40 Antisense
TTTGATCCTAATCAGAACGCATCTG 136 659 52 Antisense
AACGCATCTGATTCGAAACATATTC 33 145 67 Antisense
ACATATTCCAACTACGAAAACGACT 701 103 84 Antisense
ACAGTTGTGAACTCGACACTTCCGA 194 109 109 Antisense
CGACACTTCCGAAATCGACAACGAA 593 251 122 Antisense
AAGACCGAAATGGATCGAACGATGG 237 153 154 Antisense
GAACGATGGATCGTCGCGATCGCGA 34 349 170 Antisense
GTCGCGATCGCGATGACAATCATTC 532 475 182 Antisense
Sequence Source Affymetrix Proprietary Database