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[184879_at]

Description T14G11.1 /REP_DB=WormBase Gene ID /WP=CE04959 /TR=Q22506 /GB=AAA82346.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 81      6grp_total > 27      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 386.4
(3)
P 		254.2
(-2.3)
P 		237.5
(-3)
P 		368.6
(2.3)
P 		149
B 302.9
(3)
P 		205.2
(-1.1)
P 		160.1
(-3)
P 		298.6
(2.8)
P 		143
C 286.6
(3)
P 		254.4
(-0.5)
P 		257.8
(-0.2)
P 		231.9
(-3)
P 		55
avr 325.3
(3) 		237.9
(-1.9) 		218.5
(-3) 		299.7
(1.6) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 245
(-0.5)
P 		303.6
(3)
P 		239.3
(-0.8)
P 		201.8
(-3)
P 		226.6
(-1.5)
P 		276
(1.4)
P 		102
B 295.2
(0.3)
P 		286.4
(-0.3)
P 		246.3
(-3)
P 		334.5
(3)
P 		247.9
(-2.9)
P 		253.6
(-2.5)
P 		88
C 408.1
(3)
P 		267.9
(-1.5)
P 		220.2
(-3)
P 		237.2
(-2.5)
P 		234.3
(-2.5)
P 		269.2
(-1.4)
P 		188
avr 316.1
(3) 		286
(0.8) 		235.3
(-3) 		257.8
(-1.3) 		236.3
(-2.9) 		266.3
(-0.7) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 140.7
(3)
P 		55.2
(-2.9)
P 		62.1
(-2.4)
P 		54
(-3)
P 		87
B 96.6
(3)
P 		50.7
(-1.6)
P 		37.1
(-3)
P 		63.6
(-0.3)
P 		60
C 94.9
(3)
P 		73.1
(0.7)
P 		89.9
(2.5)
P 		39.1
(-3)
P 		56
avr 110.7
(3) 		59.7
(-2.2) 		63
(-1.9) 		52.2
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 45.2
(-3)
P 		108
(3)
P 		52.1
(-2.3)
P 		51.2
(-2.4)
P 		68.4
(-0.8)
P 		67.2
(-0.9)
P 		63
B 102.7
(3)
P 		95.3
(2)
P 		59.8
(-3)
P 		88.6
(1)
P 		100.7
(2.7)
P 		94.6
(1.9)
P 		43
C 151.3
(3)
P 		81.7
(-1)
P 		56
(-2.5)
P 		47.7
(-3)
P 		75.8
(-1.4)
P 		90.1
(-0.5)
P 		104
avr 99.7
(3) 		95
(2.4) 		56
(-3) 		62.5
(-2.1) 		81.6
(0.5) 		84
(0.8) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18322
Sequence Type Exemplar sequence
Representative Public ID T14G11.1 NCBI
Target Description T14G11.1 /REP_DB=WormBase Gene ID /WP=CE04959 /TR=Q22506 /GB=AAA82346.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076075 NCBI Caenorhabditis elegans T14G11.1 (T14G11.1) mRNA, complete cds. 11/11 None
SNAP00000000163 ENSEMBL cdna:SNAP chromosome:CEL140:X:2688986:2689262:1 10/11 None
GENEFINDER00000000164 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2688986:2689262:1 10/11 None
T14G11.1 ENSEMBL cdna:known chromosome:CEL140:X:2688986:2689309:1 gene:T14G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2688985-2689309(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14G11.1
Entrez Gene 188507 Entrez gene
SwissProt Q22506 EMBL-EBI
WormBase CE04959 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82346 Hypothetical protein T14G11.1 [Caenorhabditis elegans] ref|NP_508476.1| T14G11.1 [Caenorhabditis elegans] 2.0E-46
blast AAA82346 Hypothetical protein T14G11.1 [Caenorhabditis elegans] ref|NP_508476.1| T14G11.1 [Caenorhabditis elegans] 3.0E-37
blast CAE58844 Hypothetical protein CBG02063 [Caenorhabditis briggsae] 2.0E-30
blast CAE58844 Hypothetical protein CBG02063 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508476.1 1 23-45
T14G11.1 1 23-45
SNAP00000000163 1 23-45
GENEFINDER00000000164 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:184879_AT
tccaagcttggatcattatgcactaggatggattttcgtgatgccaatattccagccgcc
tctttccacaccgttgcagctattctggcaattttcgcaatgatgtctacagactggatt
ctcattgaagatatgagcacaaaaaacggcacaaccgacatcgacgctttgcaggtggct
caactttacatgaagaacacagaaccctgtcatgcaattggtaagtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAGCTTGGATCATTATGCACTA 423 585 22 Antisense
GCACTAGGATGGATTTTCGTGATGC 491 315 41 Antisense
TTCGTGATGCCAATATTCCAGCCGC 358 691 56 Antisense
CACACCGTTGCAGCTATTCTGGCAA 28 195 88 Antisense
GCAGCTATTCTGGCAATTTTCGCAA 500 313 97 Antisense
GTCTACAGACTGGATTCTCATTGAA 78 469 126 Antisense
AAAACGGCACAACCGACATCGACGC 624 129 164 Antisense
CAACCGACATCGACGCTTTGCAGGT 358 187 173 Antisense
GGTGGCTCAACTTTACATGAAGAAC 419 499 195 Antisense
GAAGAACACAGAACCCTGTCATGCA 121 341 213 Antisense
CCCTGTCATGCAATTGGTAAGTCTT 389 257 226 Antisense
Sequence Source Affymetrix Proprietary Database