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[184877_at]

Description R07C3.14 /REP_DB=WormBase Gene ID /WP=CE12548 /TR=O16773 /GB=AAB66243.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 16.8
(0.1)
A 		29.6
(3)
A 		3.1
(-3)
A 		8
(-1.9)
A 		27
B 12.2
(3)
A 		2.2
(-2.5)
A 		1.3
(-3)
A 		5.7
(-0.6)
A 		11
C 5.1
(-2.8)
A 		26.4
(-0.3)
A 		3.8
(-3)
A 		53.7
(3)
A 		50
avr 11.4
(-0.4) 		19.4
(2.1) 		2.7
(-3) 		22.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2.1
(-3)
A 		18.6
(-0.3)
A 		4.3
(-2.6)
A 		8
(-2)
A 		38.3
(3)
A 		6.1
(-2.3)
A 		36
B 2.2
(-3)
A 		4.6
(1.2)
A 		4.2
(0.5)
A 		5.6
(3)
A 		4.6
(1.2)
A 		2.2
(-3)
A 		3
C 7.3
(-2.5)
A 		8.5
(-2.4)
A 		47.9
(3)
A 		9
(-2.3)
A 		3.8
(-3)
A 		32.2
(0.9)
A 		44
avr 3.9
(-3) 		10.6
(-0.3) 		18.8
(3) 		7.5
(-1.6) 		15.6
(1.7) 		13.5
(0.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.1
(2.7)
A 		6.4
(3)
A 		0.8
(-3)
A 		1.2
(-2.6)
A 		6
B 3.9
(3)
A 		0.5
(-2.7)
A 		0.3
(-3)
A 		1.2
(-1.5)
A 		4
C 1.7
(-2.7)
A 		7.6
(1.8)
A 		1.3
(-3)
A 		9.1
(3)
A 		8
avr 3.9
(1.7) 		4.8
(3) 		0.8
(-3) 		3.8
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.6
(0.4)
A 		0.9
(-2.7)
A 		2
(-2.1)
A 		11.5
(3)
A 		1.5
(-2.4)
A 		11
B 0.8
(-3)
A 		1.5
(0.8)
A 		1
(-1.9)
A 		1.5
(0.8)
A 		1.9
(3)
A 		0.8
(-3)
A 		1
C 2.7
(-2.2)
A 		2.6
(-2.2)
A 		12.2
(3)
A 		1.8
(-2.7)
A 		1.2
(-3)
A 		10.8
(2.2)
A 		11
avr 1.3
(-3) 		3.6
(0.8) 		4.7
(2.7) 		1.8
(-2.2) 		4.9
(3) 		4.4
(2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4244
Sequence Type Exemplar sequence
Representative Public ID R07C3.14 NCBI
Target Description R07C3.14 /REP_DB=WormBase Gene ID /WP=CE12548 /TR=O16773 /GB=AAB66243.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061453 NCBI Caenorhabditis elegans R07C3.14 (R07C3.14) mRNA, complete cds. 11/11 None
SNAP00000022242 ENSEMBL cdna:SNAP chromosome:CEL140:II:929491:930535:-1 11/11 None
R07C3.14 ENSEMBL cdna:known chromosome:CEL140:II:929491:930190:-1 gene:R07C3.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:929489-930189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.14
Entrez Gene 187673 Entrez gene
SwissProt O16773 EMBL-EBI
WormBase CE12548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66243 Hypothetical protein R07C3.14 [Caenorhabditis elegans] ref|NP_493854.1| R07C3.14 [Caenorhabditis elegans] 4.0E-96
blast AAB66243 Hypothetical protein R07C3.14 [Caenorhabditis elegans] ref|NP_493854.1| R07C3.14 [Caenorhabditis elegans] 3.0E-90
blast AAB66235 Hypothetical protein R07C3.5 [Caenorhabditis elegans] ref|NP_493855.1| R07C3.5 [Caenorhabditis elegans] 1.0E-50
blast AAB66235 Hypothetical protein R07C3.5 [Caenorhabditis elegans] ref|NP_493855.1| R07C3.5 [Caenorhabditis elegans] 5.0E-49
blast AAB66232 Hypothetical protein R07C3.2 [Caenorhabditis elegans] ref|NP_493858.1| R07C3.2 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184877_AT
acgcgaaacactggaatctctcccctcgatcttccacccttcaaccttcccattgaaagc
tttgagaatattgagaaatctacatatcaaacacccaataatccaaaatgtcctgctctt
ggttgttccggatattaaaagcatgcgtctggtctttaataaaagggtacatgcacgata
ctttgatatcggagagaccttcaagttcattcatcattgctggagcatggaaaagaagtt
ggaacccatttttcggttaatggagccaccaagtgttgccatgaacatcgacaatttctc
tgagctcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCGAAACACTGGAATCTCTCCCC 499 91 153 Antisense
CCCTTCAACCTTCCCATTGAAAGCT 509 257 189 Antisense
GAAATCTACATATCAAACACCCAAT 330 363 227 Antisense
AAAATGTCCTGCTCTTGGTTGTTCC 168 133 257 Antisense
GTTCCGGATATTAAAAGCATGCGTC 17 441 277 Antisense
AGCATGCGTCTGGTCTTTAATAAAA 433 77 292 Antisense
AAGGGTACATGCACGATACTTTGAT 403 159 315 Antisense
GGAGAGACCTTCAAGTTCATTCATC 427 519 343 Antisense
AGTTCATTCATCATTGCTGGAGCAT 569 63 356 Antisense
GGAGCCACCAAGTGTTGCCATGAAC 640 521 414 Antisense
CATCGACAATTTCTCTGAGCTCGCC 197 211 438 Antisense
Sequence Source Affymetrix Proprietary Database