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[184876_at]

Description T08E11.4 /REP_DB=WormBase Gene ID /WP=CE19571 /TR=O76640 /GB=AAC26317.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 26      6grp_total > 26      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 164.8
(3)
P 		89.7
(-2.4)
P 		80.9
(-3)
P 		98.2
(-1.8)
P 		84
B 151.8
(3)
P 		118.7
(0.8)
P 		59.5
(-3)
P 		112.5
(0.4)
P 		92
C 142.5
(3)
P 		86.7
(-3)
A 		93.3
(-2.3)
P 		140
(2.7)
P 		56
avr 153
(3) 		98.4
(-1.4) 		77.9
(-3) 		116.9
(0.1) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 66.4
(-1.4)
P 		124.5
(3)
P 		68.4
(-1.3)
P 		46.1
(-3)
A 		69
(-1.2)
P 		66.3
(-1.5)
P 		78
B 128.3
(3)
P 		107.6
(2)
P 		55.5
(-0.5)
P 		4.6
(-3)
A 		21.7
(-2.2)
P 		55.2
(-0.5)
P 		124
C 142.4
(3)
P 		83
(-0.2)
P 		83
(-0.2)
P 		51.6
(-1.9)
A 		31.6
(-3)
M 		57.5
(-1.6)
P 		111
avr 112.4
(3) 		105
(2.4) 		69
(-0.3) 		34.1
(-3) 		40.8
(-2.5) 		59.7
(-1) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 60
(3)
P 		19.5
(-2.3)
P 		21.1
(-2.1)
P 		14.4
(-3)
P 		46
B 48.4
(3)
P 		29.3
(-0.3)
P 		13.8
(-3)
P 		24
(-1.2)
P 		35
C 47.2
(3)
P 		24.9
(-2.7)
A 		32.5
(-0.7)
P 		23.6
(-3)
P 		24
avr 51.9
(3) 		24.6
(-2.3) 		22.5
(-2.7) 		20.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 12.2
(-2.9)
P 		44.3
(3)
P 		14.9
(-2.4)
P 		11.7
(-3)
A 		20.8
(-1.3)
P 		16.1
(-2.2)
P 		33
B 44.6
(3)
P 		35.8
(1.8)
P 		13.5
(-1.3)
P 		1.2
(-3)
A 		8.8
(-1.9)
P 		20.6
(-0.3)
P 		43
C 52.8
(3)
P 		25.3
(-0.9)
P 		21.1
(-1.5)
P 		10.4
(-3)
A 		10.2
(-3)
M 		19.2
(-1.7)
P 		43
avr 36.5
(3) 		35.1
(2.7) 		16.5
(-1.2) 		7.8
(-3) 		13.3
(-1.9) 		18.6
(-0.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5168
Sequence Type Exemplar sequence
Representative Public ID T08E11.4 NCBI
Target Description T08E11.4 /REP_DB=WormBase Gene ID /WP=CE19571 /TR=O76640 /GB=AAC26317.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061685 NCBI Caenorhabditis elegans T08E11.4 (T08E11.4) mRNA, complete cds. 11/11 None
SNAP00000018371 ENSEMBL cdna:SNAP chromosome:CEL140:II:1828940:1830027:1 11/11 None
GENEFINDER00000018379 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1826542:1833439:1 11/11 None
T08E11.4 ENSEMBL cdna:known chromosome:CEL140:II:1824632:1830198:1 gene:T08E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1828938-1830026(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.4
Entrez Gene 3565234 Entrez gene
SwissProt O76640 EMBL-EBI
WormBase CE30168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 0.0
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-176
blast AAC26316 Hypothetical protein T08E11.3 [Caenorhabditis elegans] ref|NP_494087.1| T08E11.3 [Caenorhabditis elegans] 1.0E-176
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-176
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-165
blast AAC26316 Hypothetical protein T08E11.3 [Caenorhabditis elegans] ref|NP_494087.1| T08E11.3 [Caenorhabditis elegans] 1.0E-142
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.6E-40
Pfam IPR002083 EMBL-EBI MATH 1.0E-43
Pfam IPR002083 EMBL-EBI MATH 5.2E-50
Pfam IPR002083 EMBL-EBI MATH 1.0E-43
Pfam IPR002083 EMBL-EBI MATH 1.4E-51
Pfam IPR002083 EMBL-EBI MATH 1.1E-45
Pfam IPR002083 EMBL-EBI MATH 2.3E-53
Pfam IPR002083 EMBL-EBI MATH 2.4E-48
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.9E-7
Pfam IPR002083 EMBL-EBI MATH 5.2E-50
Pfam IPR002083 EMBL-EBI MATH 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:184876_AT
gcaaagccgacagggcgtggatttgagtttatcagttggaaggagttggaaagtgattat
gttgtggatgatagtatcgtggttgaagcacatgttaagatattaaacattttggattct
ccgtgcactgaaacaatgaaccagaaaacctttatgttgaatcacactgttcaaaatgtt
tcaaacattaaagaaagaggtatatatactaccaacgtagaaacacattacaatattcct
tggagaatagaaattcaaagaagagaaggtttttttggaatgtatctacaatgtgaaaaa
aagcattttgacagcaaggactggtctattgaggtggaacttgttctaacattgaagtct
tcaaatggccaaagattgtcttttacggcatcaagcacgcttaacgagcctgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGCCGACAGGGCGTGGATTTG 541 315 286 Antisense
GGGCGTGGATTTGAGTTTATCAGTT 236 493 298 Antisense
AACAATGAACCAGAAAACCTTTATG 659 131 417 Antisense
AAAACCTTTATGTTGAATCACACTG 309 129 430 Antisense
GAGGTATATATACTACCAACGTAGA 311 403 482 Antisense
CACATTACAATATTCCTTGGAGAAT 147 197 509 Antisense
GGTTTTTTTGGAATGTATCTACAAT 130 507 553 Antisense
AGGACTGGTCTATTGAGGTGGAACT 632 55 602 Antisense
GAGGTGGAACTTGTTCTAACATTGA 289 401 616 Antisense
TCTTTTACGGCATCAAGCACGCTTA 622 613 664 Antisense
TCAAGCACGCTTAACGAGCCTGCTA 468 631 676 Antisense
Sequence Source Affymetrix Proprietary Database