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[184874_at]

Description W04H10.2 /REP_DB=WormBase Gene ID /WP=CE14602 /TR=O44851 /GB=AAB95015.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 1
(-3)
A 		26.2
(0.4)
A 		12.5
(-1.5)
A 		46
(3)
A 		45
B 19.5
(3)
A 		8.6
(-0.7)
A 		1.8
(-3)
A 		10.2
(-0.2)
A 		18
C 0.9
(-3)
A 		8.6
(-2.3)
A 		6.3
(-2.5)
A 		63.4
(3)
A 		63
avr 7.1
(-3) 		14.5
(-1.6) 		6.9
(-3) 		39.9
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 41.5
(3)
A 		1.4
(-3)
A 		35.9
(2.2)
A 		24.8
(0.5)
A 		30.8
(1.4)
A 		3.6
(-2.7)
A 		40
B 10.6
(-1.1)
A 		32.7
(3)
A 		19.8
(0.6)
A 		29.1
(2.3)
A 		15.3
(-0.2)
A 		0.5
(-3)
A 		32
C 7.4
(-2.1)
A 		6
(-2.3)
A 		1.9
(-3)
A 		39
(3)
M 		30.3
(1.6)
A 		1.9
(-3)
A 		37
avr 19.8
(0.7) 		13.4
(-0.6) 		19.2
(0.6) 		31
(3) 		25.5
(1.9) 		2
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.3
(-3)
A 		5.7
(2.1)
A 		3.3
(-0.2)
A 		6.7
(3)
A 		6
B 6.2
(3)
A 		2.1
(-1.2)
A 		0.4
(-3)
A 		2.2
(-1.1)
A 		6
C 0.3
(-3)
A 		2.5
(-1.7)
A 		2.2
(-1.9)
A 		10.7
(3)
A 		10
avr 2.3
(-2.6) 		3.4
(-1.1) 		2
(-3) 		6.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.7
(1.9)
A 		0.5
(-3)
A 		7.8
(2)
A 		6.3
(1)
A 		9.3
(3)
A 		0.9
(-2.7)
A 		9
B 3.7
(-1)
A 		10.9
(3)
A 		4.8
(-0.4)
A 		7.7
(1.2)
A 		6.2
(0.4)
A 		0.2
(-3)
A 		11
C 2.7
(-1.6)
A 		1.8
(-2.2)
A 		0.5
(-3)
A 		7.8
(1.7)
M 		9.8
(3)
A 		0.7
(-2.9)
A 		9
avr 4.7
(0.2) 		4.4
(-0.1) 		4.4
(-0.1) 		7.3
(2.2) 		8.4
(3) 		0.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5421
Sequence Type Exemplar sequence
Representative Public ID W04H10.2 NCBI
Target Description W04H10.2 /REP_DB=WormBase Gene ID /WP=CE14602 /TR=O44851 /GB=AAB95015.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061368 NCBI Caenorhabditis elegans W04H10.2 (W04H10.2) mRNA, complete cds. 11/11 None
W04H10.2 ENSEMBL cdna:known chromosome:CEL140:II:605477:606741:1 gene:W04H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:605476-606741(+) 86.02 100.0
Public Domain and Genome References
Gene Title
Ensembl W04H10.2
Entrez Gene 189206 Entrez gene
SwissProt O44851 EMBL-EBI
WormBase CE14602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95015 Hypothetical protein W04H10.2 [Caenorhabditis elegans] ref|NP_493769.1| W04H10.2 [Caenorhabditis elegans] 4.0E-89
Sequence
Target Sequence 
>C. ELEGANS:184874_AT
tgagcgcatctagtcaaaatccccactggcgctactccacctttaacataatttggtttt
ctttttttattcaaaaaagccttgatcaattttttttagaaaactgttcaaaatggacat
actctatatgcacgatatatgggaattcatgtacaggggatggtttagaaaacaatacat
gcctaaagaactaccaaaacgtcatcaactacaaaagaacaaacgacgtgttgtcagtgc
aaaagcacacgttcatcgaaaaaggaggcatgtttgaaccagaagaaactgaaaaagctg
cctccaatctgggtatgaaacctactcaatatgttaaatacgtgttttccatggcgtttt
ctattcttgacgagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCGCATCTAGTCAAAATCCCCA 528 569 14 Antisense
ATGGACATACTCTATATGCACGATA 176 53 126 Antisense
AATACATGCCTAAAGAACTACCAAA 453 171 187 Antisense
GAACAAACGACGTGTTGTCAGTGCA 309 351 230 Antisense
AGTGCAAAAGCACACGTTCATCGAA 17 61 249 Antisense
AAGGAGGCATGTTTGAACCAGAAGA 709 159 275 Antisense
AACTGAAAAAGCTGCCTCCAATCTG 172 143 300 Antisense
AAGCTGCCTCCAATCTGGGTATGAA 619 149 308 Antisense
ATCTGGGTATGAAACCTACTCAATA 397 33 320 Antisense
ATACGTGTTTTCCATGGCGTTTTCT 293 23 351 Antisense
GGCGTTTTCTATTCTTGACGAGTGG 1 541 366 Antisense
Sequence Source Affymetrix Proprietary Database