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[184872_at]

Description Y116A8B.3 /REP_DB=WormBase Gene ID /WP=CE16680 /TR=O62400 /GB=CAA16286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      6grp_total > 12      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 296.4
(-0.8)
P 		311.5
(-0.2)
P 		391.3
(3)
P 		240.5
(-3)
M 		151
B 315.1
(0.6)
P 		348.3
(1.7)
P 		387.4
(3)
P 		203.6
(-3)
A 		184
C 301.9
(-1.2)
P 		474.6
(3)
P 		427.4
(1.9)
P 		226.7
(-3)
A 		248
avr 304.5
(-0.3) 		378.1
(2.2) 		402
(3) 		223.6
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 245.4
(-1.3)
P 		374.1
(3)
P 		233.1
(-1.7)
P 		260.3
(-0.8)
P 		249
(-1.2)
P 		195.8
(-3)
P 		178
B 320
(1.2)
P 		396.8
(3)
P 		323.4
(1.3)
P 		243.8
(-0.5)
P 		266.3
(0)
P 		135.5
(-3)
P 		261
C 451.3
(3)
P 		371.1
(1.3)
P 		299.4
(-0.2)
P 		262.9
(-1)
P 		175.4
(-2.9)
P 		169.4
(-3)
A 		282
avr 338.9
(1.8) 		380.7
(3) 		285.3
(0.3) 		255.7
(-0.5) 		230.2
(-1.2) 		166.9
(-3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 107.9
(3)
P 		67.6
(-0.3)
P 		102.3
(2.5)
P 		35.2
(-3)
M 		73
B 100.5
(3)
P 		86
(1.5)
P 		89.8
(1.9)
P 		43.4
(-3)
A 		57
C 100
(0.3)
P 		136.4
(2.3)
P 		149
(3)
P 		38.2
(-3)
A 		111
avr 102.8
(2.1) 		96.7
(1.6) 		113.7
(3) 		38.9
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 45.2
(-3)
P 		133.1
(3)
P 		50.8
(-2.6)
P 		66
(-1.6)
P 		75.1
(-1)
P 		47.7
(-2.8)
P 		88
B 111.3
(1.5)
P 		132.1
(3)
P 		78.5
(-0.9)
P 		64.6
(-2)
P 		108.2
(1.2)
P 		50.5
(-3)
P 		82
C 167.3
(3)
P 		113.2
(0.2)
P 		76.2
(-1.8)
P 		52.9
(-3)
P 		56.8
(-2.8)
P 		56.7
(-2.8)
A 		114
avr 107.9
(1.5) 		126.1
(3) 		68.5
(-1.6) 		61.2
(-2.2) 		80
(-0.7) 		51.6
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9913
Sequence Type Exemplar sequence
Representative Public ID Y116A8B.3 NCBI
Target Description Y116A8B.3 /REP_DB=WormBase Gene ID /WP=CE16680 /TR=O62400 /GB=CAA16286.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070651 NCBI Caenorhabditis elegans C52D10.12 (C52D10.12) mRNA, complete cds. 11/11 A 
SNAP00000044300 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17203569:17205489:-1 11/11 None
GENEFINDER00000044309 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17203419:17206761:-1 11/11 None
C52D10.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:17197864:17206799:-1 gene:C52D10.12 11/11 None
C52D10.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:17197864:17206801:-1 gene:C52D10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17203483-17206767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52D10.12
Entrez Gene 178499 Entrez gene
SwissProt Q966N1 EMBL-EBI
WormBase CE28434 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248324_AT CBS domain-containing protein-related at
CANINE:1598485_AT similar to cyclin M2 isoform 2 cfa
CANINE_2:CFAAFFX.16165.1.S1_AT similar to cyclin M2 isoform 2 cfa
CANINE_2:CFAAFFX.16179.1.S1_AT similar to cyclin M2 isoform 2 cfa
CANINE_2:CFAAFFX.16179.1.S1_S_AT similar to cyclin M2 isoform 2 cfa
CHICKEN:GGAAFFX.5115.1.S1_AT similar to cyclin M2; ancient conserved domain protein 2 gga
HG-U95AV2:41358_AT cyclin M2 hs
HU35KSUBC:RC_AA007313_AT cyclin M2 hs
HG-U133A:206818_S_AT cyclin M2 hs
HG-U133_PLUS_2:206818_S_AT cyclin M2 hs
HG-U133A_2:206818_S_AT cyclin M2 hs
HG-U133A:209874_X_AT cyclin M2 hs
HG-U133_PLUS_2:209874_X_AT cyclin M2 hs
HG-U133A_2:209874_X_AT cyclin M2 hs
U133_X3P:G8923070_3P_A_AT cyclin M2 hs
U133_X3P:HS2.271221.2.S1_3P_AT cyclin M2 hs
HG-U133_PLUS_2:1554522_AT cyclin M2 hs
HG-U133_PLUS_2:1554523_A_AT cyclin M2 hs
HG-U95B:58757_AT cyclin M2 hs
HG-U95AV2:39462_S_AT Cyclin M2 hs
HG-U95D:88354_AT Cyclin M2 hs
HU35KSUBA:W26340_AT Cyclin M2 hs
MG-U74BV2:116685_AT cyclin M2 mm
MG-U74BV2:111707_AT cyclin M2 mm
MOE430A:1423475_AT cyclin M2 mm
MOUSE430A_2:1423475_AT cyclin M2 mm
MOUSE430_2:1423475_AT cyclin M2 mm
MOE430A:1451007_AT cyclin M2 mm
MOUSE430A_2:1451007_AT cyclin M2 mm
MOUSE430_2:1451007_AT cyclin M2 mm
MOE430B:1458132_AT cyclin M2 mm
MOUSE430_2:1458132_AT cyclin M2 mm
MU19KSUBB:TC32254_AT Cyclin M2 (Cnnm2), mRNA mm
RAE230B:1382269_AT cyclin M2 (predicted) rn
RAT230_2:1382269_AT cyclin M2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_503052 C52D10.12 [Caenorhabditis elegans] gb|AAK77203.1| Hypothetical protein C52D10.12 [Caenorhabditis elegans] 0.0
blast CAE57406 Hypothetical protein CBG00360 [Caenorhabditis briggsae] 0.0
blast T26454 hypothetical protein Y116A8B.3 - Caenorhabditis elegans 1.0E-161
blast NP_503052 C52D10.12 [Caenorhabditis elegans] gb|AAK77203.1| Hypothetical protein C52D10.12 [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR002550 EMBL-EBI CBS 1.5E-44
Pfam IPR002550 EMBL-EBI CBS 1.4E-29
Pfam IPR002550 EMBL-EBI CBS 2.5E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503052.1 4 206-228,258-280,285-304,316-338
C52D10.12.1 4 206-228,258-280,285-304,316-338
C52D10.12.2 4 206-228,258-280,285-304,316-338
SNAP00000044300 3 133-155,185-207,212-231
GENEFINDER00000044309 3 206-228,258-280,285-304
Sequence
Target Sequence 
>C. ELEGANS:184872_AT
gtgcacttcaaccataaagccacgtttcatttgactttgaagcttcttccagaaatggtt
catgcctataaaatgtgtgtgaaaccgaaggttgcaccaggatcaccgccgctcggggaa
atttatccgctcgacgacatctccacgtggctcaccacagaacgtccaccgaaagaatat
ttccttccacttccacttcaaattgcatgcattggattccttctctgtctatctgcactt
ttctcaggattgacattgggcttaatgtccctgacaccccaagaactggagcttgtcatt
aaatctggagccataaaagaacaaaagtgtgcagcaaagatcttgccggtccgaaagaaa
ggaaaccttttgctatgctcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCACTTCAACCATAAAGCCACGT 339 481 424 Antisense
ACCGAAGGTTGCACCAGGATCACCG 595 87 507 Antisense
ATCACCGCCGCTCGGGGAAATTTAT 307 23 525 Antisense
GAAATTTATCCGCTCGACGACATCT 556 361 541 Antisense
TCACCACAGAACGTCCACCGAAAGA 595 623 575 Antisense
TCCACTTCCACTTCAAATTGCATGC 367 589 609 Antisense
GCATGCATTGGATTCCTTCTCTGTC 572 309 628 Antisense
GTCTATCTGCACTTTTCTCAGGATT 618 469 650 Antisense
CCCTGACACCCCAAGAACTGGAGCT 659 259 692 Antisense
GTGCAGCAAAGATCTTGCCGGTCCG 421 481 752 Antisense
AGGAAACCTTTTGCTATGCTCACTT 229 55 783 Antisense
Sequence Source Affymetrix Proprietary Database