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[184871_at]

Description Y113G7B.9 /REP_DB=WormBase Gene ID /WP=CE23291 /TR=Q9U2X4 /GB=CAB54331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 11      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 6.2
(-3)
A 		33.4
(-0)
A 		18.7
(-1.6)
A 		61.1
(3)
A 		55
B 17.7
(-1.4)
A 		18.1
(-1.3)
A 		8.1
(-3)
A 		43.7
(3)
A 		36
C 28.7
(-1.5)
A 		21.2
(-1.9)
A 		5.1
(-3)
A 		96.5
(3)
M 		91
avr 17.5
(-2.3) 		24.2
(-1.6) 		10.6
(-3) 		67.1
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 57.7
(2.3)
A 		14.3
(-1.8)
A 		64.8
(3)
A 		1.6
(-3)
A 		40.2
(0.7)
A 		1.9
(-3)
A 		63
B 3.8
(-2.3)
A 		12.2
(-0.3)
A 		7.5
(-1.4)
A 		26.1
(3)
A 		25
(2.7)
A 		1
(-3)
A 		25
C 14.6
(-0.6)
A 		33
(3)
A 		2.4
(-3)
A 		20.6
(0.6)
A 		4.3
(-2.6)
A 		23.3
(1.1)
A 		31
avr 25.4
(3) 		19.8
(1) 		24.9
(2.8) 		16.1
(-0.3) 		23.2
(2.2) 		8.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.3
(-3)
A 		7.3
(1.5)
A 		4.9
(-0.6)
A 		8.9
(3)
A 		7
B 5.6
(-0)
A 		4.5
(-0.9)
A 		1.9
(-3)
A 		9.3
(3)
A 		7
C 9.5
(0.2)
A 		6.1
(-1.2)
A 		1.8
(-3)
A 		16.3
(3)
M 		15
avr 5.8
(-1) 		6
(-0.8) 		2.9
(-3) 		11.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.6
(1.5)
A 		5.1
(-0.9)
A 		14.1
(3)
A 		0.4
(-3)
A 		12.1
(2.1)
A 		0.5
(-3)
A 		14
B 1.3
(-2.4)
A 		4.1
(-0.7)
A 		1.8
(-2.1)
A 		6.9
(1)
A 		10.2
(3)
A 		0.4
(-3)
A 		10
C 5.4
(0)
A 		10.1
(3)
A 		0.6
(-3)
A 		4.1
(-0.8)
A 		1.4
(-2.5)
A 		7.8
(1.5)
A 		10
avr 5.8
(0.5) 		6.4
(1.2) 		5.5
(0.1) 		3.8
(-1.9) 		7.9
(3) 		2.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12809
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.9 NCBI
Target Description Y113G7B.9 /REP_DB=WormBase Gene ID /WP=CE23291 /TR=Q9U2X4 /GB=CAB54331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075499
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024721 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20201419:20206400:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075499 8/11 Cross Hyb Matching Probes None
SNAP00000024711 8/11 Cross Hyb Matching Probes None
Y113G7B.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20204666-20206400(+) 99.8 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 1.0E-144
blast CAB54331 Hypothetical protein Y113G7B.9 [Caenorhabditis elegans] ref|NP_507900.2| Serpentine Receptor, class BC (class B-like) family member (srbc-34) [Caenorhabditis elegans] 1.0E-133
blast T31752 hypothetical protein C07G3.7 - Caenorhabditis elegans 5.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.2E-55
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-10
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.8E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024721 6 304-326,346-368,383-405,426-448,476-498,518-540
Sequence
Target Sequence 
>C. ELEGANS:184871_AT
aattccgaattggcctgttctactaattggctcactccttgggctggccgaggagtacat
gctttttggattttgttcttataatatggaaattccgaaaacctgcctagtattcggatg
tgctactaatcaatgtttctttcattattggttgattcaacgcagtataatattctccct
gatagttttattttctctaattttgtctataaaactacttatgatgaactctgtgaaaca
ccagcaaagtaacaatcaaatatccaaggcgaatcgtctagctctcctcgacacgtgtac
tgtgcttctgtttgattttcttccagcattctgtggacatatgtggcctactgcaccaat
gttttcttttaataacgtcggttcctacaacccggtgctgaaaatcacaggatgcgcaat
tgagtcgactgttgtaactagggttctgcttttcagaacacctgagaactctgccagtac
tccagttcagaaattaatttatactctgcgatttttgtcacttctagcacaattttttcc
aattttcaaaaacatttttgagcatttcctccgttctcgagctgtcactgttttgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCGAATTGGCCTGTTCTACTA 666 177 381 Antisense
TCTACTAATTGGCTCACTCCTTGGG 158 613 399 Antisense
TTGGGCTGGCCGAGGAGTACATGCT 553 697 419 Antisense
AACCTGCCTAGTATTCGGATGTGCT 370 147 480 Antisense
TGTGCTTCTGTTTGATTTTCTTCCA 376 557 681 Antisense
TCTGTGGACATATGTGGCCTACTGC 289 607 710 Antisense
GTTCCTACAACCCGGTGCTGAAAAT 678 437 761 Antisense
CTGAGAACTCTGCCAGTACTCCAGT 241 239 842 Antisense
TACTCTGCGATTTTTGTCACTTCTA 184 647 882 Antisense
GTCACTTCTAGCACAATTTTTTCCA 557 465 897 Antisense
TTCTCGAGCTGTCACTGTTTTGTAC 401 693 954 Antisense
Sequence Source Affymetrix Proprietary Database