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[184870_s_at]

Description Y57G11A.2 /REP_DB=WormBase Gene ID /WP=CE16664 /TR=O45861 /GB=CAB05294.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 17.6
(-2.1)
A 		18.6
(-2)
A 		95.4
(3)
A 		3.5
(-3)
A 		92
B 8
(-3)
A 		31.9
(0.4)
A 		39
(1.4)
A 		50.1
(3)
P 		42
C 47.5
(1.1)
A 		37.7
(0.2)
A 		2
(-3)
A 		69.4
(3)
A 		67
avr 24.4
(-3) 		29.4
(-1.6) 		45.5
(3) 		41
(1.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 46.1
(-2.6)
A 		21.7
(-2.9)
A 		15.1
(-3)
A 		45.2
(-2.6)
A 		230.5
(-0.5)
P 		528.9
(3)
P 		514
B 6.1
(-3)
A 		16.5
(-2.9)
A 		19.9
(-2.8)
A 		80.1
(-2)
P 		284.9
(0.8)
P 		445.9
(3)
P 		440
C 23.9
(-2.8)
A 		10.8
(-3)
A 		23.3
(-2.8)
A 		92.3
(-1.7)
P 		371.9
(2.9)
P 		375.3
(3)
P 		365
avr 25.4
(-2.9) 		16.3
(-3) 		19.4
(-3) 		72.5
(-2.2) 		295.8
(0.9) 		450
(3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6.4
(-1.5)
A 		4
(-2.1)
A 		24.9
(3)
A 		0.5
(-3)
A 		24
B 2.5
(-3)
A 		7.9
(1)
A 		9
(1.8)
A 		10.7
(3)
P 		8
C 15.7
(3)
A 		10.8
(1)
A 		0.7
(-3)
A 		11.7
(1.4)
A 		15
avr 8.2
(-2.1) 		7.6
(-3) 		11.5
(3) 		7.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 8.5
(-2.8)
A 		7.7
(-2.8)
A 		3.3
(-3)
A 		11.5
(-2.6)
A 		69.6
(0.2)
P 		128.8
(3)
P 		126
B 2.1
(-3)
A 		5.5
(-2.9)
A 		4.8
(-2.9)
A 		21.2
(-2.3)
P 		115.7
(1.2)
P 		166.3
(3)
P 		164
C 8.9
(-2.7)
A 		3.3
(-3)
A 		5.9
(-2.9)
A 		18.6
(-2.2)
P 		120.3
(2.7)
P 		125.6
(3)
P 		122
avr 6.5
(-2.9) 		5.5
(-3) 		4.7
(-3) 		17.1
(-2.5) 		101.9
(1.3) 		140.2
(3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184870_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9909
Sequence Type Exemplar sequence
Representative Public ID Y57G11A.2 NCBI
Target Description Y57G11A.2 /REP_DB=WormBase Gene ID /WP=CE16664 /TR=O45861 /GB=CAB05294.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070357 NCBI Caenorhabditis elegans Y57G11A.2 (Y57G11A.2) mRNA, complete cds. 11/11 None
Y57G11A.2 ENSEMBL cdna:known chromosome:CEL140:IV:14517006:14519503:-1 gene:Y57G11A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042426 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14517063-14519431(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11A.2
Entrez Gene 178389 Entrez gene
SwissProt O45861 EMBL-EBI
WormBase CE16664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16498 Hypothetical protein Y57G11A.2 [Caenorhabditis elegans] emb|CAB05294.1| Hypothetical protein Y57G11A.2 [Caenorhabditis elegans] ref|NP_502758.1| Y57G11A.2 [Caenorhabditis elegans] 0.0
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 4.0E-34
blast CAA20998 Hypothetical protein Y38H6C.19 [Caenorhabditis elegans] ref|NP_507963.1| Y38H6C.19 [Caenorhabditis elegans] 5.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 3.0E-106
Sequence
Target Sequence 
>C. ELEGANS:184870_S_AT
gatggtccagtgtttattcctgaagatggatcagttcattccacggaagctccatttgag
gtggccgctactgaagtttcggaagttacccatggaagcggaagtggtccaatgccagaa
cagaccgatgaagttccaggaccatgggagccagtgccatctccagttccagaaccagaa
gatccagttccaagaccagagcttgctactactactgagggacttccagttcaagagcca
gaagatcctaatccaataccagaagatacagtgccgggaccagaagacacaactccagga
ccagctgtaactgaggaaattccagaagtaccagaaccaaccgaagaacctccgactcca
acagattcggaaatcgattctccaactccagctccagcaccgggaccagaaccagaatcc
ccatccaactaccaccggctgagcatttcaatggacgagctggaagtattggttcaacaa
gcagtcgctggtcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCCAGTGTTTATTCCTGAAG 38 409 1324 Antisense
CGGAAGCTCCATTTGAGGTGGCCGC 632 239 1367 Antisense
AGGTGGCCGCTACTGAAGTTTCGGA 601 55 1382 Antisense
TCCAGGACCATGGGAGCCAGTGCCA 2 589 1458 Antisense
AGATCCAGTTCCAAGACCAGAGCTT 274 65 1503 Antisense
GAGCTTGCTACTACTACTGAGGGAC 406 389 1522 Antisense
CAGAAGATACAGTGCCGGGACCAGA 436 205 1583 Antisense
GACCAGAAGACACAACTCCAGGACC 244 383 1601 Antisense
AGCACCGGGACCAGAACCAGAATCC 507 67 1719 Antisense
ACTACCACCGGCTGAGCATTTCAAT 115 101 1751 Antisense
GGTTCAACAAGCAGTCGCTGGTCAG 87 507 1794 Antisense
Sequence Source Affymetrix Proprietary Database