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[184869_at]

Description K04F1.10 /REP_DB=WormBase Gene ID /WP=CE19961 /TR=Q9TXL4 /GB=AAC78169.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 76.3
(1.5)
A 		11.7
(-2.9)
A 		9.5
(-3)
A 		98.3
(3)
A 		89
B 15.7
(-2.3)
A 		38.5
(1.4)
A 		11.2
(-3)
A 		48.7
(3)
A 		38
C 50.9
(0.1)
A 		24.8
(-1.7)
A 		6.1
(-3)
A 		91.9
(3)
A 		86
avr 47.6
(0.3) 		25
(-1.6) 		8.9
(-3) 		79.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 10.1
(-2.5)
A 		5.3
(-3)
A 		58.8
(3)
A 		28.8
(-0.4)
A 		9.3
(-2.6)
A 		27.4
(-0.5)
A 		54
B 38.4
(0.3)
A 		34
(-0.2)
A 		7.4
(-3)
A 		64.2
(3)
A 		35.7
(-0)
A 		43
(0.8)
A 		57
C 17.5
(-1.8)
A 		70.4
(3)
A 		3.6
(-3)
A 		11.1
(-2.3)
A 		36.8
(-0)
A 		4.1
(-3)
A 		67
avr 22
(-3) 		36.6
(3) 		23.3
(-2.5) 		34.7
(2.2) 		27.3
(-0.8) 		24.8
(-1.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 27.8
(3)
A 		2.5
(-3)
A 		2.5
(-3)
A 		14.4
(-0.2)
A 		25
B 5
(-1.2)
A 		9.5
(2.3)
A 		2.6
(-3)
A 		10.4
(3)
A 		8
C 16.8
(3)
A 		7.1
(-1)
A 		2.1
(-3)
A 		15.5
(2.5)
A 		15
avr 16.5
(3) 		6.4
(-1.3) 		2.4
(-3) 		13.4
(1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.9
(-3)
A 		1.9
(-3)
A 		12.8
(3)
A 		7.3
(-0)
A 		2.8
(-2.5)
A 		6.7
(-0.4)
A 		11
B 13.3
(1.5)
A 		11.3
(0.8)
A 		1.8
(-3)
A 		17
(3)
A 		14.5
(2)
A 		16
(2.6)
A 		15
C 6.5
(-1.4)
A 		21.5
(3)
A 		0.9
(-3)
A 		2.2
(-2.6)
A 		11.9
(0.2)
A 		1.4
(-2.9)
A 		21
avr 7.2
(-1.1) 		11.6
(3) 		5.2
(-3) 		8.8
(0.4) 		9.7
(1.2) 		8
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15793
Sequence Type Exemplar sequence
Representative Public ID K04F1.10 NCBI
Target Description K04F1.10 /REP_DB=WormBase Gene ID /WP=CE19961 /TR=Q9TXL4 /GB=AAC78169.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071072 NCBI Caenorhabditis elegans K04F1.10 (K04F1.10) mRNA, complete cds. 11/11 None
SNAP00000011963 ENSEMBL cdna:SNAP chromosome:CEL140:V:1660570:1664525:1 11/11 None
GENEFINDER00000011970 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1660126:1665677:1 11/11 None
K04F1.10 ENSEMBL cdna:known chromosome:CEL140:V:1662408:1664332:1 gene:K04F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1662407-1664332(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.10
Entrez Gene 186996 Entrez gene
SwissProt Q9TXL4 EMBL-EBI
WormBase CE19961 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 0.0
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 1.0E-162
blast AAC78170 Hypothetical protein K04F1.11 [Caenorhabditis elegans] ref|NP_503472.2| K04F1.11 [Caenorhabditis elegans] 1.0E-114
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 1.0E-70
blast CAB16535 Hypothetical protein Y70C5C.3 [Caenorhabditis elegans] ref|NP_507228.1| Y70C5C.3 [Caenorhabditis elegans] 4.0E-70
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 8.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.6E-13
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.1E-9
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.1E-9
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.1E-16
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.6E-13
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.1E-9
Sequence
Target Sequence 
>C. ELEGANS:184869_AT
agccaacttctgtgcacacacaacagatgccattaacggagaaaagacttgcgtttttga
aagtttcaatattacaaatatggaacccgactgcgttcgaattgttgggcaagtgagaat
agatagtggagatgaagagcatgttcataagttaaatttattgaaatttatctatggaac
tttgaatattgagaatacgaacctgacgaccgtggactttttgaatgagctggagtacat
tgtgacacttgaatcggttgttgtttcaataactgtcagaaacaatctacaattatcaaa
cttctcgttgccaaaactaaagggtgtccgctcatctgatactttacaacaagggtatgt
acaacggtggatcagtttctatgacaaccatgagtccctgaaaaagtggcttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCAACTTCTGTGCACACACAACA 636 83 585 Antisense
GGAACCCGACTGCGTTCGAATTGTT 28 529 666 Antisense
GAATACGAACCTGACGACCGTGGAC 709 193 777 Antisense
GACCGTGGACTTTTTGAATGAGCTG 326 383 792 Antisense
GAGCTGGAGTACATTGTGACACTTG 186 387 811 Antisense
GTGACACTTGAATCGGTTGTTGTTT 116 483 826 Antisense
AATTATCAAACTTCTCGTTGCCAAA 439 175 875 Antisense
AACTAAAGGGTGTCCGCTCATCTGA 483 105 899 Antisense
GTCCGCTCATCTGATACTTTACAAC 609 473 910 Antisense
GGTGGATCAGTTTCTATGACAACCA 124 499 950 Antisense
TGAGTCCCTGAAAAAGTGGCTTGTC 270 551 975 Antisense
Sequence Source Affymetrix Proprietary Database