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[184867_s_at]

Description C18F10.7 /REP_DB=WormBase Gene ID /WP=CE00784 /TR=Q18099 /GB=AAC47054.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 581.8
(-1.1)
P 		663.6
(2.7)
P 		540.7
(-3)
P 		670.5
(3)
P 		130
B 592.9
(-0.4)
P 		453.2
(-3)
P 		495.8
(-2.2)
P 		779.6
(3)
P 		326
C 631
(1.3)
P 		422
(-2.2)
P 		372.2
(-3)
P 		736.9
(3)
P 		365
avr 601.9
(0.1) 		512.9
(-2) 		469.6
(-3) 		729
(3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 577.4
(0.3)
P 		458.4
(-1.4)
P 		341.7
(-3)
P 		463.8
(-1.3)
P 		711.6
(2.2)
P 		770.9
(3)
P 		429
B 499.7
(-1)
P 		368.6
(-2.7)
P 		343.2
(-3)
P 		456.6
(-1.5)
P 		583.3
(0.1)
P 		803.4
(3)
P 		460
C 444.6
(-2.5)
P 		420.9
(-3)
P 		419.3
(-3)
P 		571.6
(-0.3)
P 		639.3
(0.9)
P 		756.5
(3)
P 		337
avr 507.2
(-1) 		416
(-2.3) 		368.1
(-3) 		497.3
(-1.1) 		644.7
(1.1) 		776.9
(3) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 211.8
(3)
P 		144
(-0.6)
P 		141.3
(-0.7)
P 		98.2
(-3)
P 		114
B 189.1
(3)
P 		111.9
(-3)
P 		114.9
(-2.8)
P 		166.1
(1.2)
P 		77
C 208.9
(3)
P 		121.3
(-3)
P 		129.7
(-2.4)
P 		124.3
(-2.8)
P 		88
avr 203.3
(3) 		125.7
(-3) 		128.6
(-2.8) 		129.5
(-2.7) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 106.4
(-1.6)
P 		163
(0.8)
P 		74.4
(-3)
P 		117.6
(-1.2)
P 		214.7
(3)
P 		187.7
(1.8)
P 		140
B 173.9
(-0.5)
P 		122.7
(-1.9)
P 		83.3
(-3)
P 		120.9
(-2)
P 		237
(1.3)
P 		299.6
(3)
P 		216
C 164.8
(-0.6)
P 		128.4
(-2.1)
P 		106.7
(-3)
P 		114.9
(-2.7)
P 		206.9
(1.1)
P 		253.2
(3)
P 		147
avr 148.4
(-0.7) 		138
(-1.1) 		88.1
(-3) 		117.8
(-1.9) 		219.5
(2) 		246.8
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7546
Sequence Type Exemplar sequence
Representative Public ID C18F10.7 NCBI
Target Description C18F10.7 /REP_DB=WormBase Gene ID /WP=CE00784 /TR=Q18099 /GB=AAC47054.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065973 NCBI Caenorhabditis elegans C18F10.7a (C18F10.7) mRNA, complete cds. 11/11 None
SNAP00000044239 ENSEMBL cdna:SNAP chromosome:CEL140:III:6276183:6278285:-1 11/11 None
GENEFINDER00000044248 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6276183:6278285:-1 11/11 None
C18F10.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:6276001:6278290:-1 gene:C18F10.7 11/11 None
C18F10.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:6276003:6278296:-1 gene:C18F10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C18F10.7b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175889 2 1 NM_065973 184867_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6276181-6278284(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18F10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47054 Hypothetical protein C18F10.7a [Caenorhabditis elegans] ref|NP_498374.1| C18F10.7a [Caenorhabditis elegans] 0.0
blast CAE70724 Hypothetical protein CBG17467 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 2.0E-8
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.3
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 0.45
Sequence
Target Sequence 
>C. ELEGANS:184867_S_AT
atcccaattgtggagctcatggcagtgaatagcccacactttgcacgcctccacaatttc
atccgcctccagctacccgcaggattcccagtcaaaattgaaattcccctcttccatatt
gtcagcgctcggattgcattccaaaatattaattcacctgggaaacatgtgacaccgatc
gataatcaaaatgttgatattgaagaggaagctttcgaaattccagatggatacgcgatc
gatgatgatggtagatatggaatcacctgggaggatgatgatgatcgtaataatcgaaac
aataggaatcaggtggcgaatgggaatactagtcggagaggattaggaaataactattct
gatgatatgctcctccagtacgcaatccaacaaagtcttcttgaaagtactgctcgccaa
ccatctcgagtacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCAATTGTGGAGCTCATGGCAG 158 31 1150 Antisense
AGTGAATAGCCCACACTTTGCACGC 424 59 1173 Antisense
TACCCGCAGGATTCCCAGTCAAAAT 404 649 1223 Antisense
CAAAATTGAAATTCCCCTCTTCCAT 102 191 1242 Antisense
TCTTCCATATTGTCAGCGCTCGGAT 89 619 1259 Antisense
TCAGCGCTCGGATTGCATTCCAAAA 524 625 1271 Antisense
ACCTGGGAAACATGTGACACCGATC 228 87 1305 Antisense
TGATATGCTCCTCCAGTACGCAATC 169 565 1512 Antisense
GTACGCAATCCAACAAAGTCTTCTT 181 459 1527 Antisense
GTCTTCTTGAAAGTACTGCTCGCCA 286 469 1544 Antisense
TGCTCGCCAACCATCTCGAGTACAA 369 579 1560 Antisense
Sequence Source Affymetrix Proprietary Database