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[184866_s_at] 7TM chemoreceptor, srw family /// 7TM chemoreceptor, srw family

Description H05B21.4 /REP_DB=WormBase Gene ID /WP=CE17954 /TR=O61971 /GB=AAC17764.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 0      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.7
(-3)
A 		2.9
(-2.6)
A 		1
(-2.9)
A 		33.5
(3)
A 		33
B 4.9
(-1.8)
A 		1
(-3)
A 		20.3
(3)
A 		6
(-1.4)
A 		19
C 4.3
(-0.6)
A 		3
(-1.4)
A 		0.4
(-3)
A 		10.1
(3)
A 		10
avr 3.3
(-2.6) 		2.3
(-3) 		7.2
(-0.9) 		16.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.9
(-2.5)
A 		0.7
(-3)
A 		28.8
(3)
A 		1
(-2.9)
A 		2.1
(-2.7)
A 		0.8
(-3)
A 		28
B 0.8
(-3)
A 		1
(-2.9)
A 		2.4
(-2.6)
A 		23.5
(3)
A 		0.7
(-3)
A 		1.5
(-2.8)
A 		23
C 2.6
(-2.3)
A 		14.6
(3)
A 		1.1
(-3)
A 		4.1
(-1.7)
A 		2.4
(-2.4)
A 		1.3
(-2.9)
A 		14
avr 2.1
(-2.4) 		5.4
(-0.4) 		10.8
(3) 		9.5
(2.2) 		1.7
(-2.7) 		1.2
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.3
(-3)
A 		0.6
(-2.6)
A 		0.3
(-3)
A 		4.9
(3)
A 		5
B 1.6
(-1.1)
A 		0.2
(-3)
A 		4.7
(3)
A 		1.3
(-1.5)
A 		5
C 1.4
(1.9)
A 		0.9
(0)
A 		0.1
(-3)
A 		1.7
(3)
A 		2
avr 1.1
(-1.5) 		0.6
(-3) 		1.7
(0.3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.3
(-2.9)
A 		6.3
(3)
A 		0.3
(-2.9)
A 		0.6
(-2.6)
A 		0.2
(-3)
A 		6
B 0.3
(-3)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		6.2
(3)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		6
C 1
(-2)
A 		4.5
(3)
A 		0.3
(-3)
A 		0.8
(-2.3)
A 		0.8
(-2.3)
A 		0.4
(-2.9)
A 		4
avr 0.6
(-2.4) 		1.7
(0.9) 		2.4
(3) 		2.4
(3) 		0.6
(-2.4) 		0.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184866_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15342
Sequence Type Exemplar sequence
Representative Public ID H05B21.4 NCBI
Target Description H05B21.4 /REP_DB=WormBase Gene ID /WP=CE17954 /TR=O61971 /GB=AAC17764.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071404(11), NM_071397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071404 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-144) (srw-144) mRNA, complete cds. 11/11 A 
NM_071397 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-143) (srw-143) mRNA, complete cds. 11/11 A 
H27D07.3 ENSEMBL cdna:known chromosome:CEL140:V:2939430:2941332:-1 gene:H27D07.3 11/11 A 
H05B21.4 ENSEMBL cdna:known chromosome:CEL140:V:2959016:2960821:-1 gene:H05B21.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017836 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2958539-2960821(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
7TM chemoreceptor, srw family
Gene Symbol srw-144
srw-143
Ensembl H27D07.3
H05B21.4
Entrez Gene 186693 Entrez gene
186788 Entrez gene
SwissProt O61971 EMBL-EBI
O61909 EMBL-EBI
WormBase CE34568 Wormbase
CE34572 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17764 Serpentine receptor, class w protein 144 [Caenorhabditis elegans] ref|NP_503805.2| Serpentine Receptor, class W family member (srw-144) [Caenorhabditis elegans] 0.0
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 0.0
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 1.0E-170
blast AAC17764 Serpentine receptor, class w protein 144 [Caenorhabditis elegans] ref|NP_503805.2| Serpentine Receptor, class W family member (srw-144) [Caenorhabditis elegans] 1.0E-170
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 1.0E-123
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503805.2 6 36-58,68-85,160-182,222-244,273-295,310-332
NP_503798.2 6 36-58,68-85,160-182,222-244,273-295,310-332
H27D07.3 6 36-58,68-85,160-182,222-244,273-295,310-332
H05B21.4 6 36-58,68-85,160-182,222-244,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:184866_S_AT
gtctctacgataataccttgtttcatctttccaattgtgactgtatttcttgtgaaagaa
ctttggaaagccgaagcgaatagaaaacgattattctcttcaaaaaaagtgaacgactcc
tcgaaaaacactcaactggttttattcttgacgtgcgtgttcttcatcgcccaatttccc
attggaatttccatcggtgtttcatacttcttttcagaaactcccggattcacaattatg
ctgcacgaaatttcgtatatattcagtgtaattctgattgccaataccatttcacacttt
ttcatatgcatttttatgtcttcacagtatcgcgcggaactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTACGATAATACCTTGTTTCA 668 469 691 Antisense
TAATACCTTGTTTCATCTTTCCAAT 549 635 701 Antisense
TTCATCTTTCCAATTGTGACTGTAT 286 689 712 Antisense
ATTGTGACTGTATTTCTTGTGAAAG 1 5 724 Antisense
TAGAAAACGATTATTCTCTTCAAAA 52 651 771 Antisense
GACTCCTCGAAAAACACTCAACTGG 418 373 805 Antisense
AACTGGTTTTATTCTTGACGTGCGT 382 143 824 Antisense
TCTTGACGTGCGTGTTCTTCATCGC 98 617 836 Antisense
CACGAAATTTCGTATATATTCAGTG 695 197 934 Antisense
ATATGCATTTTTATGTCTTCACAGT 426 21 994 Antisense
TCTTCACAGTATCGCGCGGAACTTA 6 617 1009 Antisense
Sequence Source Affymetrix Proprietary Database