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[184865_at] 7TM chemoreceptor, srw family

Description H05B21.4 /REP_DB=WormBase Gene ID /WP=CE17954 /TR=O61971 /GB=AAC17764.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 2.7
(-3)
A 		9.3
(-2.5)
A 		9.2
(-2.5)
A 		77.4
(3)
A 		75
B 18.9
(-1.6)
A 		6.8
(-2.8)
A 		5
(-3)
A 		63.7
(3)
A 		59
C 4.8
(-3)
A 		6.2
(-2.9)
A 		6.7
(-2.8)
A 		77
(3)
A 		72
avr 8.8
(-2.8) 		7.4
(-3) 		7
(-3) 		72.7
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 6.5
(-2.5)
A 		2.3
(-3)
A 		53.3
(3)
A 		2.4
(-3)
A 		48.2
(2.4)
A 		10.8
(-2)
A 		51
B 4.2
(-3)
A 		5
(-2.3)
A 		11.1
(3)
A 		4.3
(-2.9)
A 		7.4
(-0.2)
A 		6.5
(-1)
A 		7
C 3.7
(-3)
A 		30.1
(2.2)
A 		4.9
(-2.8)
A 		6.7
(-2.4)
A 		34
(3)
A 		4.1
(-2.9)
A 		30
avr 4.8
(-2.9) 		12.5
(-1.1) 		23.1
(1.4) 		4.5
(-3) 		29.9
(3) 		7.1
(-2.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-3)
A 		2
(-2.4)
A 		2.4
(-2.2)
A 		11.3
(3)
A 		10
B 6
(-0.7)
A 		1.7
(-2.8)
A 		1.2
(-3)
A 		13.6
(3)
A 		12
C 1.6
(-3)
A 		1.8
(-2.9)
A 		2.3
(-2.6)
A 		13
(3)
A 		11
avr 2.9
(-2.4) 		1.8
(-3) 		2
(-2.9) 		12.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		0.8
(-2.9)
A 		11.6
(1.7)
A 		0.6
(-3)
A 		14.5
(3)
A 		2.6
(-2.1)
A 		14
B 1.4
(-2.1)
A 		1.7
(-1.1)
A 		2.7
(2.1)
A 		1.1
(-3)
A 		3
(3)
A 		2.4
(1.1)
A 		2
C 1.4
(-2.9)
A 		9.2
(1.9)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		11
(3)
A 		1.4
(-2.9)
A 		10
avr 1.3
(-2.8) 		3.9
(-1) 		5.2
(-0) 		1
(-3) 		9.5
(3) 		2.1
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15342
Sequence Type Exemplar sequence
Representative Public ID H05B21.4 NCBI
Target Description H05B21.4 /REP_DB=WormBase Gene ID /WP=CE17954 /TR=O61971 /GB=AAC17764.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071404
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017836 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2937142:2941332:-1 None
H05B21.4 ENSEMBL cdna:known chromosome:CEL140:V:2959016:2960821:-1 gene:H05B21.4 A 
NM_071404 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-144) (srw-144) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2958539-2960821(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-144
Ensembl H05B21.4
Entrez Gene 186693 Entrez gene
SwissProt O61971 EMBL-EBI
WormBase CE34568 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17764 Serpentine receptor, class w protein 144 [Caenorhabditis elegans] ref|NP_503805.2| Serpentine Receptor, class W family member (srw-144) [Caenorhabditis elegans] 0.0
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 1.0E-171
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 1.0E-170
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 1.0E-166
blast AAC17762 Serpentine receptor, class w protein 142 [Caenorhabditis elegans] ref|NP_503804.2| Serpentine Receptor, class W family member (srw-142) [Caenorhabditis elegans] 1.0E-158
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 1.0E-123
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503805.2 6 36-58,68-85,160-182,222-244,273-295,310-332
H05B21.4 6 36-58,68-85,160-182,222-244,273-295,310-332
GENEFINDER00000017836 10 36-58,68-85,160-182,222-244,273-295,310-332,432-454,496-518,547-569,584-606
Sequence
Target Sequence 
>C. ELEGANS:184865_AT
ttaatcaatgcaatcgtctctacgataataccttgtttcatctttccaattgtgactgta
tttcttgtgaaagaactttggaaagccgaagcgaatagaaaacgattattctcttcaaaa
aaagtgaacgactcctcgaaaaacactcaactggttttattcttgacgtgcgtgttcttc
atcgcccaatttcccattggaatttccatcggtgtttcatacttcttttcagaaactccc
ggattcacaattatgctgcacgaaatttcgtatatattcagtgtaattctgattgccaat
accatttcacactttttcatatgcatttttatgtcttcacagtatcgcgcggaacttaaa
aaatccatatactggagaacaaaagctaaaatatcgtgtttggaaaattgtaattatatt
caaacaactaccactgagcgcctccaaaccaccttcaaatataaatttcgatctctcaat
ataattcttgttgccaatacaatatctcattttttcatatgcatacttatgtcgtcacag
tatcgcatggaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATCAATGCAATCGTCTCTACGA 592 683 676 Antisense
AATTTCCATCGGTGTTTCATACTTC 547 173 876 Antisense
TCGGTGTTTCATACTTCTTTTCAGA 207 607 884 Antisense
ACTCCCGGATTCACAATTATGCTGC 90 99 910 Antisense
GATTGCCAATACCATTTCACACTTT 663 433 966 Antisense
ACCATTTCACACTTTTTCATATGCA 632 85 976 Antisense
TTCAAACAACTACCACTGAGCGCCT 144 685 1094 Antisense
CTCCAAACCACCTTCAAATATAAAT 477 233 1117 Antisense
GTTGCCAATACAATATCTCATTTTT 294 441 1165 Antisense
ATATGCATACTTATGTCGTCACAGT 583 21 1192 Antisense
GTCGTCACAGTATCGCATGGAAGTT 516 473 1206 Antisense
Sequence Source Affymetrix Proprietary Database