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[184864_at]

Description C08F11.11 /REP_DB=WormBase Gene ID /WP=CE17388 /TR=O62053 /GB=CAB05678.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.7
(-3)
A 		3.8
(-3)
A 		20.8
(1.4)
A 		26.9
(3)
A 		23
B 26.7
(1.7)
A 		1.9
(-3)
A 		6.1
(-2.2)
A 		33.4
(3)
P 		32
C 2.2
(-3)
A 		10.3
(-2.2)
A 		4.1
(-2.8)
A 		64.4
(3)
P 		62
avr 10.9
(-2.1) 		5.3
(-3) 		10.3
(-2.2) 		41.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6126
1 2 3 4 5 6 range
A 9.5
(-3)
A 		2.6
(-3)
A 		2.7
(-3)
A 		211.3
(-2.8)
P 		5400.7
(3)
P 		1818.4
(-1)
P 		5398
B 10.4
(-3)
A 		35.5
(-3)
A 		3.1
(-3)
A 		218.8
(-2.8)
P 		6128.2
(3)
P 		2137.1
(-0.9)
P 		6125
C 2.1
(-3)
A 		13.9
(-3)
A 		4.5
(-3)
A 		172.3
(-2.8)
P 		5673.9
(3)
P 		2329.3
(-0.5)
P 		5672
avr 7.3
(-3) 		17.3
(-3) 		3.4
(-3) 		200.8
(-2.8) 		5734.3
(3) 		2094.9
(-0.8) 		5731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-2.3)
A 		0.8
(-3)
A 		5.4
(3)
A 		3.9
(1)
A 		5
B 8.5
(3)
A 		0.5
(-3)
A 		1.4
(-2.3)
A 		7.1
(2)
P 		8
C 0.7
(-3)
A 		3
(-1.6)
A 		1.4
(-2.6)
A 		10.9
(3)
P 		10
avr 3.5
(-0.9) 		1.4
(-3) 		2.7
(-1.7) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2489
1 2 3 4 5 6 range
A 1.7
(-3)
A 		0.9
(-3)
A 		0.6
(-3)
A 		53.6
(-2.8)
P 		1629.7
(3)
P 		442.7
(-1.4)
P 		1629
B 3.6
(-3)
A 		11.8
(-3)
A 		0.7
(-3)
A 		58
(-2.9)
P 		2489.8
(3)
P 		796.9
(-1.1)
P 		2489
C 0.8
(-3)
A 		4.2
(-3)
A 		1.2
(-3)
A 		34.6
(-2.9)
P 		1836
(3)
P 		779.8
(-0.5)
P 		1835
avr 2
(-3) 		5.6
(-3) 		0.8
(-3) 		48.7
(-2.9) 		1985.2
(3) 		673.1
(-1) 		1984
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9372
Sequence Type Exemplar sequence
Representative Public ID C08F11.11 NCBI
Target Description C08F11.11 /REP_DB=WormBase Gene ID /WP=CE17388 /TR=O62053 /GB=CAB05678.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070234 NCBI Caenorhabditis elegans C08F11.11 (C08F11.11) mRNA, complete cds. 11/11 None
SNAP00000042603 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13646797:13647405:-1 11/11 None
C08F11.11 ENSEMBL cdna:known chromosome:CEL140:IV:13646766:13647405:-1 gene:C08F11.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042609 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13646802-13647411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.11
Entrez Gene 178331 Entrez gene
SwissProt O62053 EMBL-EBI
WormBase CE17388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05678 Hypothetical protein C08F11.11 [Caenorhabditis elegans] ref|NP_502635.1| C08F11.11 [Caenorhabditis elegans] 8.0E-50
blast CAB16475 Hypothetical protein Y45F10C.2 [Caenorhabditis elegans] ref|NP_502639.1| Y45F10C.2 [Caenorhabditis elegans] 6.0E-10
blast CAB62779 Hypothetical protein C08F11.12 [Caenorhabditis elegans] ref|NP_502637.1| C08F11.12 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 2.3E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502635.1 1 5-22
C08F11.11 1 5-22
SNAP00000042603 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:184864_AT
tagctcttgtctctgcaattgcagttggcaatcgttcctctcatttgaaaaaatcgaaag
aatgttctagtgatggccatactgagagatgcgagtacactggagatcttacagtcaaaa
ctgattcaacttgcaatcattctacatacatcatgacaaaagtaactccaccaaatgaaa
gtccatcaaacggagtggctcattgcagaacagctccatgcaactcagaagactatgcag
atgttgactgtttggtcgcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTCTTGTCTCTGCAATTGCAGT 546 651 50 Antisense
ATTGCAGTTGGCAATCGTTCCTCTC 119 7 67 Antisense
GCAATCGTTCCTCTCATTTGAAAAA 517 321 77 Antisense
GAATGTTCTAGTGATGGCCATACTG 463 331 109 Antisense
GATGGCCATACTGAGAGATGCGAGT 268 407 121 Antisense
GATGCGAGTACACTGGAGATCTTAC 50 415 137 Antisense
CTTGCAATCATTCTACATACATCAT 569 217 179 Antisense
AACTCCACCAAATGAAAGTCCATCA 398 139 213 Antisense
GAGTGGCTCATTGCAGAACAGCTCC 140 401 242 Antisense
AACAGCTCCATGCAACTCAGAAGAC 644 135 258 Antisense
GATGTTGACTGTTTGGTCGCATTTG 437 409 289 Antisense
Sequence Source Affymetrix Proprietary Database