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[184862_at]

Description F16H11.3 /REP_DB=WormBase Gene ID /WP=CE04398 /TR=Q19495 /GB=AAA98003.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 45.4
(-3)
A 		65.3
(-1.5)
A 		75.8
(-0.8)
A 		127.3
(3)
A 		82
B 73.2
(-2.8)
P 		95
(3)
A 		72.6
(-3)
A 		74.5
(-2.5)
A 		22
C 77.1
(-1.2)
A 		58.3
(-3)
A 		76.3
(-1.3)
A 		120.5
(3)
P 		62
avr 65.2
(-3) 		72.9
(-1.9) 		74.9
(-1.6) 		107.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 83.3
(-1.3)
A 		27.2
(-3)
A 		64.8
(-1.9)
A 		104.2
(-0.7)
A 		230.2
(3)
P 		195
(2)
P 		203
B 82.1
(-2.4)
A 		83.6
(-2.3)
A 		65.1
(-3)
A 		69.4
(-2.8)
P 		135.6
(-0.4)
P 		226.3
(3)
P 		161
C 51.6
(-2.6)
A 		82.7
(-1.8)
A 		38.7
(-3)
A 		67.7
(-2.2)
A 		127.3
(-0.5)
P 		252.3
(3)
P 		214
avr 72.3
(-2.4) 		64.5
(-2.7) 		56.2
(-3) 		80.4
(-2.1) 		164.4
(0.9) 		224.5
(3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.5
(-0.5)
A 		14.2
(-3)
A 		19.8
(3)
A 		18.6
(1.7)
A 		6
B 23.3
(2.8)
P 		23.5
(3)
A 		16.8
(-2.3)
A 		15.9
(-3)
A 		8
C 25.5
(2.3)
A 		16.8
(-3)
A 		26.6
(3)
A 		20.3
(-0.9)
P 		10
avr 21.8
(3) 		18.2
(-3) 		21.1
(1.8) 		18.3
(-2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 15.4
(-2.4)
A 		9.7
(-3)
A 		14.1
(-2.6)
A 		26.4
(-1.3)
A 		69.5
(3)
P 		47.5
(0.8)
P 		60
B 28.6
(-1.9)
A 		27.8
(-2)
A 		15.8
(-3)
A 		18.4
(-2.8)
P 		55.1
(0.4)
P 		84.4
(3)
P 		69
C 19.1
(-2.3)
A 		25.2
(-1.8)
A 		9.8
(-3)
A 		13.6
(-2.7)
A 		41.2
(-0.5)
P 		84.5
(3)
P 		75
avr 21
(-2.2) 		20.9
(-2.2) 		13.2
(-3) 		19.5
(-2.4) 		55.3
(1.3) 		72.1
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16193
Sequence Type Exemplar sequence
Representative Public ID F16H11.3 NCBI
Target Description F16H11.3 /REP_DB=WormBase Gene ID /WP=CE04398 /TR=Q19495 /GB=AAA98003.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076394 NCBI Caenorhabditis elegans F16H11.3 (F16H11.3) mRNA, complete cds. 11/11 None
SNAP00000010346 ENSEMBL cdna:SNAP chromosome:CEL140:X:4647565:4649165:-1 11/11 None
GENEFINDER00000010352 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4647565:4649165:-1 11/11 None
F16H11.3 ENSEMBL cdna:known chromosome:CEL140:X:4647565:4649165:-1 gene:F16H11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4647565-4649166(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H11.3
Entrez Gene 184599 Entrez gene
SwissProt Q19495 EMBL-EBI
WormBase CE04398 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5337 nucleoside transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98003 Hypothetical protein F16H11.3 [Caenorhabditis elegans] ref|NP_508795.1| F16H11.3 [Caenorhabditis elegans] 0.0
blast CAE68626 Hypothetical protein CBG14513 [Caenorhabditis briggsae] 0.0
blast CAB62793 Hypothetical protein C47A4.2b [Caenorhabditis elegans] ref|NP_001023069.1| C47A4.2b [Caenorhabditis elegans] 2.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508795.1 11 24-46,69-91,98-120,130-149,161-183,198-220,261-280,300-322,335-354,367-389,402-424
F16H11.3 11 24-46,69-91,98-120,130-149,161-183,198-220,261-280,300-322,335-354,367-389,402-424
SNAP00000010346 11 24-46,69-91,98-120,130-149,161-183,198-220,261-280,300-322,335-354,367-389,402-424
GENEFINDER00000010352 11 24-46,69-91,98-120,130-149,161-183,198-220,261-280,300-322,335-354,367-389,402-424
Sequence
Target Sequence 
>C. ELEGANS:184862_AT
ctctcacaatcttccctgttatgatgaccgttaccactcgtggagattccggcttcctaa
acaaaattatgtctgaaaacgatgaaatctacactttgctcacaagtttcctcgtcttca
atttgttcgctgcgattggatccatagttgcttccaagattcactggccgacaccccgtt
acctcaaatttgccataatcttgcgtgctcttttcattccattcttcttcttctgcaact
atcgtgtccagacgcgtgcttatcctgttttctttgagtctactgacatttttgtgattg
gtggaattgccatgtctttttcacatggatacctcagcgctctggcaatgggatacactc
caaacgtcgtgccatctcactactcaagatttgccgctcagctttccgtttgcactctta
tggttggccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCACAATCTTCCCTGTTATGAT 317 231 824 Antisense
TATGATGACCGTTACCACTCGTGGA 482 655 843 Antisense
ACACTTTGCTCACAAGTTTCCTCGT 120 107 914 Antisense
GTTTCCTCGTCTTCAATTTGTTCGC 422 451 929 Antisense
TGCTTCCAAGATTCACTGGCCGACA 21 579 972 Antisense
TGCCATAATCTTGCGTGCTCTTTTC 574 585 1014 Antisense
GCTTATCCTGTTTTCTTTGAGTCTA 444 305 1081 Antisense
GTGGAATTGCCATGTCTTTTTCACA 183 491 1124 Antisense
TTTTCACATGGATACCTCAGCGCTC 57 677 1141 Antisense
AGCGCTCTGGCAATGGGATACACTC 299 83 1159 Antisense
TTTGCACTCTTATGGTTGGCCTTCT 635 667 1232 Antisense
Sequence Source Affymetrix Proprietary Database