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[184860_at]

Description C40A11.8 /REP_DB=WormBase Gene ID /WP=CE19371 /TR=Q9TZA5 /GB=AAC68763.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3
(-3)
A 		4.5
(-2.7)
A 		8.5
(-2)
A 		34.9
(3)
A 		32
B 9.5
(-1.7)
A 		6.9
(-3)
A 		7.3
(-2.8)
A 		18.5
(3)
A 		12
C 2.8
(-3)
A 		4.4
(-2.3)
A 		6.2
(-1.5)
A 		16.8
(3)
A 		14
avr 5.1
(-3) 		5.3
(-2.9) 		7.3
(-2.3) 		23.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 50.6
(3)
A 		4.4
(-2.9)
A 		4.2
(-3)
A 		3.9
(-3)
A 		44.1
(2.2)
A 		8.9
(-2.4)
A 		47
B 14.1
(1)
A 		7.2
(-1.4)
A 		6
(-1.8)
A 		3.9
(-2.5)
A 		2.5
(-3)
A 		19.8
(3)
A 		17
C 3.5
(-3)
A 		3.6
(-2.7)
A 		5.8
(3)
A 		3.6
(-2.7)
A 		4.7
(0.1)
A 		3.9
(-2)
A 		2
avr 22.7
(3) 		5.1
(-2.6) 		5.3
(-2.5) 		3.8
(-3) 		17.1
(1.2) 		10.9
(-0.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.1
(-2.9)
A 		1
(-3)
A 		2.2
(-1.2)
A 		5.1
(3)
A 		4
B 3
(0.4)
A 		1.7
(-3)
A 		1.7
(-3)
A 		4
(3)
A 		2
C 0.9
(-3)
A 		1.3
(-1.7)
A 		2.2
(1.1)
A 		2.8
(3)
A 		2
avr 1.7
(-2.1) 		1.3
(-3) 		2
(-1.4) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.3
(1.1)
A 		1.6
(-2.7)
A 		0.9
(-3)
A 		1
(-3)
A 		13.3
(3)
A 		2.2
(-2.4)
A 		12
B 4.9
(0.7)
A 		2.4
(-1.7)
A 		1.4
(-2.6)
A 		1
(-3)
A 		1
(-3)
A 		7.4
(3)
A 		6
C 1.3
(1.5)
A 		1.1
(0)
A 		1.5
(3)
A 		0.7
(-3)
A 		1.5
(3)
A 		1.3
(1.5)
A 		1
avr 5.2
(2.9) 		1.7
(-1.9) 		1.3
(-2.5) 		0.9
(-3) 		5.3
(3) 		3.6
(0.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4358
Sequence Type Exemplar sequence
Representative Public ID C40A11.8 NCBI
Target Description C40A11.8 /REP_DB=WormBase Gene ID /WP=CE19371 /TR=Q9TZA5 /GB=AAC68763.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061799(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061799 NCBI Caenorhabditis elegans C40A11.8 (C40A11.8) mRNA, complete cds. 10/11 None
SNAP00000005081 ENSEMBL cdna:SNAP chromosome:CEL140:II:2150553:2152169:-1 9/11 None
GENEFINDER00000005092 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2148807:2152226:-1 9/11 None
C40A11.8 ENSEMBL cdna:known chromosome:CEL140:II:2150553:2151291:-1 gene:C40A11.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2150551-2151319(-) 92.41 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.8
Entrez Gene 183356 Entrez gene
SwissProt Q9TZA5 EMBL-EBI
WormBase CE36798 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 2.0E-93
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 2.0E-61
blast AAC68763 Hypothetical protein C40A11.8 [Caenorhabditis elegans] ref|NP_494200.3| C40A11.8 [Caenorhabditis elegans] 2.0E-60
blast AAC68763 Hypothetical protein C40A11.8 [Caenorhabditis elegans] ref|NP_494200.3| C40A11.8 [Caenorhabditis elegans] 9.0E-47
blast AAK31405 Hypothetical protein C08F1.8 [Caenorhabditis elegans] ref|NP_494081.1| C08F1.8 [Caenorhabditis elegans] 2.0E-24
blast AAK31405 Hypothetical protein C08F1.8 [Caenorhabditis elegans] ref|NP_494081.1| C08F1.8 [Caenorhabditis elegans] 7.0E-18
blast AAY55851 Hypothetical protein C08F1.11 [Caenorhabditis elegans] ref|NP_001021937.1| C08F1.11 [Caenorhabditis elegans] 9.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 4.0E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494200.3 2 28-50,65-87
C40A11.8 2 28-50,65-87
SNAP00000005081 3 5-24,52-74,89-111
GENEFINDER00000005092 3 49-67,93-115,132-154
Sequence
Target Sequence 
>C. ELEGANS:184860_AT
atctgcgtctaaattcccgcatttctgttgaaaactatagttttacaaattcaaactata
atatctcagagccaaatttgcaatttttttttgaaaaattaccaaaagtatgcccaaatg
tttcactttcagaaagtgtattcaaaatttctttactcgtctgcgtcgtaatcgttgcta
tcgagtattacctacatataataatgttggatcaattcaatgagccattcacgcccacgc
actacactctactgaaaagagccaaggcaacaactgctcagaagctattcataattattt
tcatggccttaaccgaggcctattacataggccgttgcttcatcagcctggtcccctggg
cagatcaggaggaagcctatgagattcgcgatgtaacccgatttatccttccgatcatca
atatcttatcgattcccttgatctacgtggcttgcttggcctattactctgaagaggttg
cgtttagcgagatggtgcccgacaatatggtgctgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGCGTCTAAATTCCCGCATTTC 511 33 32 Antisense
CAAAATTTCTTTACTCGTCTGCGTC 160 191 174 Antisense
GTCTGCGTCGTAATCGTTGCTATCG 570 471 190 Antisense
CCACGCACTACACTCTACTGAAAAG 48 273 266 Antisense
TATTACATAGGCCGTTGCTTCATCA 88 661 352 Antisense
CTGGTCCCCTGGGCAGATCAGGAGG 201 241 379 Antisense
CGATGTAACCCGATTTATCCTTCCG 51 249 420 Antisense
ATCTTATCGATTCCCTTGATCTACG 1 33 454 Antisense
TGGCTTGCTTGGCCTATTACTCTGA 273 545 479 Antisense
TGCGTTTAGCGAGATGGTGCCCGAC 562 569 510 Antisense
GGTGCCCGACAATATGGTGCTGAGG 232 501 525 Antisense
Sequence Source Affymetrix Proprietary Database