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[184859_s_at]

Description T24E12.9 /REP_DB=WormBase Gene ID /WP=CE24013 /TR=O44880 /GB=AAB95044.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 51.6
(-0.1)
A 		19.8
(-2.4)
A 		11.9
(-3)
A 		93.8
(3)
A 		82
B 14.6
(-2.9)
A 		16.9
(-2.6)
A 		13.4
(-3)
A 		62.6
(3)
A 		49
C 21
(-2.2)
A 		86.2
(2)
A 		9.2
(-3)
A 		102.2
(3)
A 		93
avr 29.1
(-1.6) 		41
(-0.6) 		11.5
(-3) 		86.2
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 12.2
(2.1)
A 		10.3
(-0.6)
A 		12.8
(3)
A 		8.6
(-3)
A 		11.6
(1.3)
A 		11.4
(1)
A 		4
B 32.9
(3)
A 		8
(-2.7)
A 		13.9
(-1.4)
A 		8.9
(-2.5)
A 		7
(-2.9)
A 		6.7
(-3)
A 		26
C 18.4
(-0.8)
A 		43.4
(3)
A 		8.2
(-2.3)
A 		3.9
(-3)
A 		9.6
(-2.1)
A 		7.3
(-2.5)
A 		40
avr 21.2
(3) 		20.6
(2.7) 		11.6
(-1.1) 		7.1
(-3) 		9.4
(-2) 		8.5
(-2.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 18.8
(3)
A 		4.3
(-2.5)
A 		3.1
(-3)
A 		13.7
(1.1)
A 		16
B 4.7
(-2.1)
A 		4.2
(-2.4)
A 		3.1
(-3)
A 		13.3
(3)
A 		10
C 6.9
(-2)
A 		24.8
(3)
A 		3.2
(-3)
A 		17.2
(0.9)
A 		22
avr 10.1
(0.6) 		11.1
(1.1) 		3.1
(-3) 		14.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-2.6)
A 		3.7
(3)
A 		2.8
(-0.6)
A 		2.2
(-3)
A 		3.5
(2.2)
A 		2.8
(-0.6)
A 		2
B 11.4
(3)
A 		2.6
(-2.8)
A 		3.4
(-2.3)
A 		2.3
(-3)
A 		2.8
(-2.7)
A 		2.5
(-2.9)
A 		9
C 6.8
(-0.1)
A 		13.2
(3)
A 		2.1
(-2.4)
A 		0.8
(-3)
A 		3.1
(-1.9)
A 		2.5
(-2.2)
A 		12
avr 6.8
(3) 		6.5
(2.6) 		2.8
(-1.8) 		1.8
(-3) 		3.1
(-1.4) 		2.6
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184859_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5188
Sequence Type Exemplar sequence
Representative Public ID T24E12.9 NCBI
Target Description T24E12.9 /REP_DB=WormBase Gene ID /WP=CE24013 /TR=O44880 /GB=AAB95044.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062244 NCBI Caenorhabditis elegans T24E12.9 (T24E12.9) mRNA, complete cds. 11/11 None
SNAP00000005571 ENSEMBL cdna:SNAP chromosome:CEL140:II:3765285:3766362:-1 11/11 None
GENEFINDER00000005586 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3765285:3774173:-1 11/11 None
T24E12.9 ENSEMBL cdna:known chromosome:CEL140:II:3765081:3768462:-1 gene:T24E12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3765283-3768106(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.9
Entrez Gene 173721 Entrez gene
SwissProt O44880 EMBL-EBI
WormBase CE24013 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95044 Hypothetical protein T24E12.9 [Caenorhabditis elegans] ref|NP_494645.1| T24E12.9 [Caenorhabditis elegans] 0.0
blast F88109 protein T24E12.9 [imported] - Caenorhabditis elegans 0.0
blast AAB95047 Hypothetical protein T24E12.10 [Caenorhabditis elegans] ref|NP_494646.1| T24E12.10 [Caenorhabditis elegans] 0.0
blast F88109 protein T24E12.9 [imported] - Caenorhabditis elegans 1.0E-130
blast AAB95044 Hypothetical protein T24E12.9 [Caenorhabditis elegans] ref|NP_494645.1| T24E12.9 [Caenorhabditis elegans] 2.0E-94
blast NP_508312 C36C9.5 [Caenorhabditis elegans] gb|AAC67427.1| Hypothetical protein C36C9.5 [Caenorhabditis elegans] 2.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005586 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:184859_S_AT
caacagcgcgacgagctctgaaggctcaaccagctcagtgagccccgccgacgcagcctt
cccgccagagtccacaccatttgatcataaaatccagactatacctttgctcctgagtca
gttttcaacacaaggaagcagctctttcgaaccacgtcgaggggtctctagtgctccaga
tcatgccacgagttctcgttactgtcacaagtttggcagacctgatgctcctggcccatc
cactctcaagcgtcaaagcaaaacttcacctgtcaaagctaaaagaaagaagaaccttcc
aaacggaccacatccattgactccagggactctggagtataaccaaagatatgctgaagc
gttggccaatcacgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGCGCGACGAGCTCTGAAGGC 625 187 1095 Antisense
CCAGAGTCCACACCATTTGATCATA 657 271 1159 Antisense
ATCCAGACTATACCTTTGCTCCTGA 634 39 1186 Antisense
CAAGGAAGCAGCTCTTTCGAACCAC 8 183 1225 Antisense
TCGAACCACGTCGAGGGGTCTCTAG 192 591 1241 Antisense
TCTAGTGCTCCAGATCATGCCACGA 17 615 1261 Antisense
ACGAGTTCTCGTTACTGTCACAAGT 684 93 1282 Antisense
CAAGTTTGGCAGACCTGATGCTCCT 467 183 1302 Antisense
GAAGAACCTTCCAAACGGACCACAT 395 335 1383 Antisense
ACCACATCCATTGACTCCAGGGACT 388 85 1401 Antisense
CTGAAGCGTTGGCCAATCACGCCAC 256 239 1448 Antisense
Sequence Source Affymetrix Proprietary Database