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[184858_at]

Description Y75B8A.18 /REP_DB=WormBase Gene ID /WP=CE23029 /TR=Q9XW84 /GB=CAA22085.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      6grp_total > 87      4grp_total > 09      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 77.4
(-3)
A 		109.3
(-1.9)
A 		100
(-2.2)
A 		245.8
(3)
P 		168
B 98.2
(-3)
A 		122.3
(-1.3)
A 		119.6
(-1.5)
A 		182.2
(3)
P 		84
C 83.9
(-3)
A 		97.7
(-2.4)
A 		124.7
(-1.2)
P 		223.2
(3)
P 		139
avr 86.5
(-3) 		109.8
(-1.9) 		114.8
(-1.7) 		217.1
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 144.7
(-1)
A 		73.6
(-3)
A 		164.5
(-0.5)
P 		139.6
(-1.2)
P 		150.8
(-0.9)
P 		289.6
(3)
P 		216
B 84.5
(-3)
P 		85.6
(-3)
P 		141.2
(-1.1)
P 		90.3
(-2.8)
P 		206.8
(1.2)
P 		260.4
(3)
P 		176
C 99.5
(-3)
A 		130.5
(-1.5)
P 		103.2
(-2.8)
A 		118.8
(-2.1)
P 		178.2
(0.8)
P 		224.5
(3)
P 		125
avr 109.6
(-2.5) 		96.6
(-3) 		136.3
(-1.5) 		116.2
(-2.3) 		178.6
(0) 		258.2
(3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 28.2
(-0.8)
A 		23.7
(-3)
A 		26.1
(-1.8)
A 		36
(3)
P 		12
B 31.3
(-1.1)
A 		30.2
(-1.6)
A 		27.7
(-3)
A 		38.8
(3)
P 		11
C 27.8
(-3)
A 		28.1
(-2.9)
A 		43.5
(3)
P 		37.6
(0.7)
P 		16
avr 29.1
(-1.9) 		27.3
(-3) 		32.4
(-0) 		37.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 26.7
(-2.9)
A 		26.2
(-3)
A 		35.8
(-1.7)
P 		35.4
(-1.8)
P 		45.5
(-0.4)
P 		70.5
(3)
P 		44
B 29.4
(-2.5)
P 		28.5
(-2.6)
P 		34.3
(-2.1)
P 		23.9
(-3)
P 		84
(1.9)
P 		97.1
(3)
P 		73
C 36.9
(-1.5)
A 		39.8
(-1.1)
P 		26.3
(-2.7)
A 		23.9
(-3)
P 		57.7
(1)
P 		75.2
(3)
P 		51
avr 31
(-2.6) 		31.5
(-2.6) 		32.1
(-2.5) 		27.7
(-3) 		62.4
(0.9) 		80.9
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6061
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.18 NCBI
Target Description Y75B8A.18 /REP_DB=WormBase Gene ID /WP=CE23029 /TR=Q9XW84 /GB=CAA22085.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067189 NCBI Caenorhabditis elegans Y75B8A.18 (Y75B8A.18) mRNA, complete cds. 11/11 None
GENEFINDER00000020193 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12225589:12226068:-1 10/11 None
Y75B8A.18 ENSEMBL cdna:known chromosome:CEL140:III:12225589:12226984:-1 gene:Y75B8A.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020197 1/11 Cross Hyb Matching Probes None
SNAP00000020083 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12225584-12226089(-) 77.97 77.97
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.18
Entrez Gene 190705 Entrez gene
SwissProt Q9XW84 EMBL-EBI
WormBase CE23029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22085 Hypothetical protein Y75B8A.18 [Caenorhabditis elegans] ref|NP_499590.1| Y75B8A.18 [Caenorhabditis elegans] 5.0E-93
blast CAA22085 Hypothetical protein Y75B8A.18 [Caenorhabditis elegans] ref|NP_499590.1| Y75B8A.18 [Caenorhabditis elegans] 1.0E-65
blast CAE75122 Hypothetical protein CBG23050 [Caenorhabditis briggsae] 3.0E-23
blast CAE75122 Hypothetical protein CBG23050 [Caenorhabditis briggsae] 5.0E-23
Sequence
Target Sequence 
>C. ELEGANS:184858_AT
agatatggcctggcctagttcggcaaaaaactcttccatttcaatttatggagggaagcc
agaaatccgattttttttaaaccagtttttatcgatttttctcgagatgagtgattttgt
agtgctcggggagccaacaaccaacaatttatccccagaagtcggatgtcagactgaaga
gattgctgtagaaaatatgacaacacagacagcagaggaatcgattacaaaatatcgaaa
aaacacggaaaatccagaaatgtcgtattgggagtcaattgttgcaaatcgacagaatga
agtggatcgaattaaagcgttgaatgagaagatggaagtggagaaaagtcgaaaatcgga
gatgctcgacgcgaaacagactgaatacacgcgactcttcgatttgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATATGGCCTGGCCTAGTTCGGCA 626 65 45 Antisense
GTGATTTTGTAGTGCTCGGGGAGCC 281 485 155 Antisense
CTCGGGGAGCCAACAACCAACAATT 677 229 169 Antisense
ACAACCAACAATTTATCCCCAGAAG 32 113 181 Antisense
ATCCCCAGAAGTCGGATGTCAGACT 650 37 195 Antisense
GACAACACAGACAGCAGAGGAATCG 418 365 243 Antisense
GGGAGTCAATTGTTGCAAATCGACA 172 495 314 Antisense
GAAAATCGGAGATGCTCGACGCGAA 446 353 395 Antisense
GATGCTCGACGCGAAACAGACTGAA 92 415 405 Antisense
ACAGACTGAATACACGCGACTCTTC 128 107 420 Antisense
TACACGCGACTCTTCGATTTGGGAA 3 643 430 Antisense
Sequence Source Affymetrix Proprietary Database