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[184857_at]

Description C04E6.12 /REP_DB=WormBase Gene ID /WP=CE07917 /TR=O01471 /GB=AAK39143.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 42      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 64.1
(-3)
A 		166.4
(2.7)
P 		171.8
(3)
P 		122.9
(0.3)
A 		108
B 58
(-3)
A 		110.8
(3)
P 		101.2
(1.9)
A 		86.1
(0.2)
A 		53
C 69.5
(-3)
A 		176.1
(3)
A 		86
(-2.1)
P 		72.3
(-2.8)
A 		107
avr 63.9
(-3) 		151.1
(3) 		119.7
(0.8) 		93.8
(-0.9) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 59.7
(-3)
A 		163.5
(3)
A 		109.3
(-0.1)
P 		146.2
(2)
P 		90
(-1.2)
A 		96.4
(-0.9)
A 		104
B 105.4
(1.3)
A 		112.2
(3)
P 		88.2
(-3)
P 		98.3
(-0.5)
A 		105.2
(1.3)
P 		92.2
(-2)
M 		24
C 46.4
(-3)
A 		158.3
(3)
P 		74.2
(-1.5)
P 		105
(0.1)
P 		72.8
(-1.6)
A 		64.4
(-2)
M 		112
avr 70.5
(-3) 		144.7
(3) 		90.6
(-1.4) 		116.5
(0.7) 		89.3
(-1.5) 		84.3
(-1.9) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 23.3
(-1.8)
A 		36.1
(1)
P 		44.9
(3)
P 		18
(-3)
A 		27
B 18.5
(-2.9)
A 		27.4
(3)
P 		23.4
(0.3)
A 		18.4
(-3)
A 		9
C 23
(-1.3)
A 		50.6
(3)
A 		30
(-0.2)
P 		12.2
(-3)
A 		38
avr 21.6
(-1.5) 		38
(3) 		32.8
(1.6) 		16.2
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11
(-3)
A 		58.2
(3)
A 		23.8
(-1.4)
P 		37.1
(0.3)
P 		27.1
(-1)
A 		23.5
(-1.4)
A 		47
B 36.7
(1.3)
A 		37.4
(1.5)
P 		21.4
(-3)
P 		26
(-1.7)
A 		42.8
(3)
P 		34.4
(0.6)
M 		21
C 17.2
(-3)
A 		48.3
(3)
P 		18.9
(-2.7)
P 		21.1
(-2.2)
P 		23.6
(-1.8)
A 		21.6
(-2.2)
M 		31
avr 21.6
(-3) 		48
(3) 		21.4
(-3) 		28.1
(-1.5) 		31.2
(-0.8) 		26.5
(-1.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12353
Sequence Type Exemplar sequence
Representative Public ID C04E6.12 NCBI
Target Description C04E6.12 /REP_DB=WormBase Gene ID /WP=CE07917 /TR=O01471 /GB=AAK39143.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072140 NCBI Caenorhabditis elegans C04E6.12 (C04E6.12) mRNA, complete cds. 11/11 None
GENEFINDER00000001277 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5916821:5922347:-1 10/11 None
C04E6.12 ENSEMBL cdna:known chromosome:CEL140:V:5921029:5922350:-1 gene:C04E6.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001270 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5921028-5922350(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E6.12
Entrez Gene 182204 Entrez gene
SwissProt O01471 EMBL-EBI
WormBase CE07917 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39142 Hypothetical protein C04E6.11 [Caenorhabditis elegans] ref|NP_504540.2| C04E6.11 [Caenorhabditis elegans] 0.0
blast CAE64546 Hypothetical protein CBG09291 [Caenorhabditis briggsae] 0.0
blast AAK39143 Hypothetical protein C04E6.12 [Caenorhabditis elegans] ref|NP_504541.1| C04E6.12 [Caenorhabditis elegans] 1.0E-110
blast AAK39143 Hypothetical protein C04E6.12 [Caenorhabditis elegans] ref|NP_504541.1| C04E6.12 [Caenorhabditis elegans] 2.0E-85
blast CAE64545 Hypothetical protein CBG09290 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504541.1 1 5-27
C04E6.12 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:184857_AT
ttatttcgattgtgctcttcctaattccatatgcttcctcagtgttaaactcaaattcaa
ttgactggtgtgaatattgggcacgggttggtaaaaaagtaagtgcacgtaaccattcta
acacatttcttaaacaggttgctaatcaaaatgagtttttgaagactgatcggccagaat
gtacaggatatgaattgccaagcggattgaagaggagtgatacattctcctgttccaaaa
ctgagatctaccattgcctggactgtgagccaacgtgccacaatctgattccaaaatgtc
ggaaggtacggcgaacgtttgcgacagtattcacgattcgcgacaccagagtacagcgta
gtgttcaggagcaatgcaataagggatgcgtctgcaaaactggactcgcaagaaatgcag
aaggaaagtgcgtgacacttcgggaatgtgcatctcagtcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTCGATTGTGCTCTTCCTAAT 658 677 44 Antisense
TAATTCCATATGCTTCCTCAGTGTT 41 635 65 Antisense
GCACGTAACCATTCTAACACATTTC 254 315 148 Antisense
GTGATACATTCTCCTGTTCCAAAAC 243 485 260 Antisense
AAAACTGAGATCTACCATTGCCTGG 296 131 280 Antisense
TTGCCTGGACTGTGAGCCAACGTGC 198 701 297 Antisense
GCCAACGTGCCACAATCTGATTCCA 168 279 312 Antisense
GGTACGGCGAACGTTTGCGACAGTA 690 503 348 Antisense
TTCACGATTCGCGACACCAGAGTAC 693 685 373 Antisense
GATGCGTCTGCAAAACTGGACTCGC 297 413 428 Antisense
TCGGGAATGTGCATCTCAGTCCCCA 517 605 483 Antisense
Sequence Source Affymetrix Proprietary Database