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[184856_at]

Description Y43F8C.17 /REP_DB=WormBase Gene ID /WP=CE21915 /TR=Q9XWM8 /GB=CAA21624.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 4.1
(-3)
A 		56.7
(3)
A 		52.7
(2.5)
A 		26.8
(-0.4)
A 		53
B 16.5
(-1.3)
A 		46.5
(3)
A 		6.7
(-2.6)
A 		4.2
(-3)
A 		42
C 6
(-3)
A 		20.3
(-1.8)
A 		43.3
(0.2)
A 		75
(3)
A 		69
avr 8.9
(-3) 		41.2
(3) 		34.2
(1.7) 		35.3
(1.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 33.2
(1.7)
A 		3.7
(-3)
A 		5.1
(-2.8)
A 		4.8
(-2.8)
A 		41.7
(3)
A 		8.4
(-2.3)
A 		38
B 3.1
(-3)
A 		24.6
(1.8)
A 		21.3
(1.1)
A 		3.7
(-2.9)
A 		29.8
(3)
A 		6.2
(-2.3)
A 		27
C 5.1
(-3)
A 		21.3
(-0.7)
A 		46.6
(3)
A 		27.6
(0.3)
A 		37.4
(1.7)
A 		5.3
(-3)
A 		42
avr 13.8
(-1.5) 		16.5
(-1) 		24.3
(0.6) 		12
(-1.9) 		36.3
(3) 		6.6
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.5
(-3)
A 		12.3
(2.3)
A 		13.8
(3)
A 		3.9
(-1.8)
A 		12
B 5.2
(-0.6)
A 		11.5
(3)
A 		1.6
(-2.6)
A 		0.9
(-3)
A 		11
C 2
(-3)
A 		5.8
(-1.3)
A 		15.1
(3)
A 		12.6
(1.9)
A 		13
avr 2.9
(-3) 		9.9
(2.8) 		10.2
(3) 		5.8
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.1
(-0.4)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		12.6
(3)
A 		2
(-2.5)
A 		12
B 1.1
(-2.9)
A 		8.2
(0.9)
A 		5.2
(-0.7)
A 		1
(-3)
A 		12.1
(3)
A 		2.3
(-2.3)
A 		11
C 1.9
(-2.9)
A 		6.5
(-0.3)
A 		11.9
(2.9)
A 		5.6
(-0.8)
A 		12.1
(3)
A 		1.8
(-3)
A 		10
avr 3
(-2.4) 		5.3
(-1.1) 		6.1
(-0.6) 		2.6
(-2.7) 		12.3
(3) 		2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12791
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.17 NCBI
Target Description Y43F8C.17 /REP_DB=WormBase Gene ID /WP=CE21915 /TR=Q9XWM8 /GB=CAA21624.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075416 NCBI Caenorhabditis elegans Y43F8C.17 (Y43F8C.17) mRNA, complete cds. 11/11 None
SNAP00000039623 ENSEMBL cdna:SNAP chromosome:CEL140:V:19714145:19715512:1 9/11 None
GENEFINDER00000039638 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19714145:19715512:1 11/11 None
Y43F8C.17 ENSEMBL cdna:known chromosome:CEL140:V:19714145:19715679:1 gene:Y43F8C.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19714144-19715679(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.17
Entrez Gene 189880 Entrez gene
SwissProt Q9XWM8 EMBL-EBI
WormBase CE21915 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21624 Hypothetical protein Y43F8C.17 [Caenorhabditis elegans] ref|NP_507817.1| Y43F8C.17 [Caenorhabditis elegans] 1.0E-97
blast CAA21624 Hypothetical protein Y43F8C.17 [Caenorhabditis elegans] ref|NP_507817.1| Y43F8C.17 [Caenorhabditis elegans] 5.0E-87
blast CAA21624 Hypothetical protein Y43F8C.17 [Caenorhabditis elegans] ref|NP_507817.1| Y43F8C.17 [Caenorhabditis elegans] 2.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507817.1 1 7-29
Y43F8C.17 1 7-29
SNAP00000039623 1 7-29
GENEFINDER00000039638 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184856_AT
gactgggttttctagaactgtcttcttattcctggtggcaattgttggtgtggcgtacct
tcaggaattgattggaggaggtggagatgaggagccggatacaccaaagaagggagcagt
tttctataacggtttcaattacgtcccactgcccgagctgcaaggagatcaaccaagatg
cagccagtgcccgcttgagagcaatacatttacggagaacggtacaattggctcaaaata
tatagatgttggacctgatgcaaacggttgtcgtgtaatgcatcactactgtgttatggt
gggcggcaacccgaactgtgaagtaacggcggcaattcaaagtggtgaaggcgaactcga
gaagttcatctatagtagtaatataagtgacggcgggaacgctacgtgcgtatataatgc
catca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGGGTTTTCTAGAACTGTCTTC 680 375 15 Antisense
TGTCTTCTTATTCCTGGTGGCAATT 263 559 33 Antisense
GTTGGTGTGGCGTACCTTCAGGAAT 18 435 58 Antisense
GGAGATGAGGAGCCGGATACACCAA 406 517 97 Antisense
CACTGCCCGAGCTGCAAGGAGATCA 127 199 161 Antisense
CCAGTGCCCGCTTGAGAGCAATACA 624 271 198 Antisense
GGACCTGATGCAAACGGTTGTCGTG 281 523 265 Antisense
GTCGTGTAATGCATCACTACTGTGT 433 471 284 Antisense
GTTATGGTGGGCGGCAACCCGAACT 335 311 307 Antisense
AAGTGACGGCGGGAACGCTACGTGC 440 157 399 Antisense
GCTACGTGCGTATATAATGCCATCA 551 301 415 Antisense
Sequence Source Affymetrix Proprietary Database