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[184855_at]

Description T23B12.8 /REP_DB=WormBase Gene ID /WP=CE14040 /TR=O17007 /GB=AAB69939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 11      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 316.5
(-1.5)
P 		295.9
(-1.9)
P 		244.7
(-3)
P 		526.1
(3)
P 		281
B 291.4
(-1.8)
P 		267.2
(-2.5)
P 		246.9
(-3)
P 		469
(3)
P 		222
C 295.5
(-1.4)
P 		260
(-2)
P 		191
(-3)
P 		586.8
(3)
P 		396
avr 301.1
(-1.5) 		274.4
(-2.1) 		227.5
(-3) 		527.3
(3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 258.5
(-3)
P 		438.2
(-0.9)
P 		765.4
(3)
P 		686.2
(2.1)
P 		399.4
(-1.3)
P 		289
(-2.6)
P 		507
B 318.4
(-2.2)
P 		576.8
(0.8)
P 		761.6
(3)
P 		443.8
(-0.8)
P 		586.5
(0.9)
P 		254.4
(-3)
P 		507
C 360.2
(-2.4)
P 		507.9
(0.4)
P 		406.9
(-1.5)
P 		651.9
(3)
P 		458.2
(-0.6)
P 		325.1
(-3)
P 		327
avr 312.4
(-2.6) 		507.6
(0.7) 		644.6
(3) 		594
(2.1) 		481.4
(0.2) 		289.5
(-3) 		355
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 115.2
(3)
P 		64.2
(-3)
P 		64
(-3)
P 		77
(-1.5)
P 		51
B 92.9
(2)
P 		66
(-1.8)
P 		57.2
(-3)
P 		100
(3)
P 		43
C 97.8
(2.8)
P 		74.7
(-1.5)
P 		66.6
(-3)
P 		98.9
(3)
P 		32
avr 102
(3) 		68.3
(-2.1) 		62.6
(-3) 		92
(1.5) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 47.7
(-3)
P 		155.8
(2.1)
P 		166.7
(2.7)
P 		174
(3)
P 		120.5
(0.5)
P 		70.4
(-1.9)
P 		126
B 110.8
(-2.3)
P 		192
(1.1)
P 		184.9
(0.8)
P 		117.6
(-2.1)
P 		238.3
(3)
P 		94.9
(-3)
P 		143
C 133.5
(0.5)
P 		155
(3)
P 		103.6
(-3)
P 		131.1
(0.2)
P 		148.3
(2.2)
P 		108.8
(-2.4)
P 		51
avr 97.3
(-2.5) 		167.6
(2.9) 		151.7
(1.7) 		140.9
(0.8) 		169
(3) 		91.4
(-3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12359
Sequence Type Exemplar sequence
Representative Public ID T23B12.8 NCBI
Target Description T23B12.8 /REP_DB=WormBase Gene ID /WP=CE14040 /TR=O17007 /GB=AAB69939.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072782 NCBI Caenorhabditis elegans T23B12.8 (T23B12.8) mRNA, complete cds. 11/11 None
SNAP00000042005 ENSEMBL cdna:SNAP chromosome:CEL140:V:8472657:8473594:-1 11/11 None
GENEFINDER00000042016 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8472657:8473005:-1 11/11 None
T23B12.8 ENSEMBL cdna:known chromosome:CEL140:V:8472657:8473005:-1 gene:T23B12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8472657-8473006(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B12.8
Entrez Gene 188778 Entrez gene
SwissProt O17007 EMBL-EBI
WormBase CE14040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69939 Hypothetical protein T23B12.8 [Caenorhabditis elegans] ref|NP_505183.1| T23B12.8 [Caenorhabditis elegans] 3.0E-55
blast AAB69939 Hypothetical protein T23B12.8 [Caenorhabditis elegans] ref|NP_505183.1| T23B12.8 [Caenorhabditis elegans] 4.0E-55
blast CAE58395 Hypothetical protein CBG01524 [Caenorhabditis briggsae] 5.0E-46
Sequence
Target Sequence 
>C. ELEGANS:184855_AT
gcgattggtcccaggattcaatccacttcgtcaagttgatgcaaatggaaaagaatgccg
aggaaacgtggaattgccattttgcaagggttactgtaagactagcgagagtggcaccca
tggctttccaccacgagttcaaaatagtaaagtgtgcacattggtcaccacttcaactcg
aaaagtagttcttgatgattgtgatgatggagccgatgagagtgtcaagtttgtaatggt
tccacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATTGGTCCCAGGATTCAATCCA 589 287 15 Antisense
CAGGATTCAATCCACTTCGTCAAGT 573 207 26 Antisense
AATGCCGAGGAAACGTGGAATTGCC 97 163 68 Antisense
GGAATTGCCATTTTGCAAGGGTTAC 297 533 84 Antisense
AGGGTTACTGTAAGACTAGCGAGAG 381 55 101 Antisense
AGACTAGCGAGAGTGGCACCCATGG 322 71 113 Antisense
GTAAAGTGTGCACATTGGTCACCAC 15 461 161 Antisense
ATTGGTCACCACTTCAACTCGAAAA 357 3 174 Antisense
AAAGTAGTTCTTGATGATTGTGATG 628 121 196 Antisense
GAGCCGATGAGAGTGTCAAGTTTGT 688 385 224 Antisense
GTCAAGTTTGTAATGGTTCCACATG 652 463 238 Antisense
Sequence Source Affymetrix Proprietary Database