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[184854_at]

Description Y9C9A.12 /REP_DB=WormBase Gene ID /WP=CE21348 /TR=Q9N2T1 /GB=AAF60924.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.4
(-2.3)
A 		18.8
(3)
A 		1.4
(-3)
A 		6.1
(-1.4)
A 		17
B 4.4
(-2.4)
A 		24.2
(3)
A 		2.2
(-3)
A 		4.4
(-2.4)
A 		22
C 3.4
(-2.8)
A 		2.8
(-3)
A 		4.3
(-2.6)
A 		24.5
(3)
A 		22
avr 3.7
(-2.5) 		15.3
(3) 		2.6
(-3) 		11.7
(1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.2
(-2.1)
A 		1.8
(-3)
A 		3.5
(-2.6)
A 		30.3
(3)
A 		1.7
(-3)
A 		16.2
(0)
A 		29
B 3.4
(-0.5)
A 		5.3
(2.3)
A 		5.8
(3)
A 		3.2
(-0.8)
A 		3.5
(-0.4)
A 		1.7
(-3)
A 		4
C 1.4
(-3)
A 		18.1
(-0.6)
A 		3.9
(-2.6)
A 		43.9
(3)
A 		13.6
(-1.3)
A 		1.3
(-3)
A 		43
avr 3.7
(-3) 		8.4
(-1.7) 		4.4
(-2.8) 		25.8
(3) 		6.3
(-2.3) 		6.4
(-2.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-1.7)
A 		4.1
(3)
A 		0.4
(-3)
A 		0.9
(-2.2)
A 		4
B 1.4
(-2)
A 		6
(3)
A 		0.5
(-3)
A 		0.9
(-2.6)
A 		6
C 1.1
(-2.5)
A 		0.8
(-3)
A 		1.5
(-1.7)
A 		4.1
(3)
A 		3
avr 1.2
(-2.1) 		3.6
(3) 		0.8
(-3) 		2
(-0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		0.6
(-2.9)
A 		0.8
(-2.8)
A 		7.7
(3)
A 		0.5
(-3)
A 		3.9
(-0.2)
A 		7
B 1.2
(-0)
A 		1.8
(3)
A 		1.4
(1)
A 		0.9
(-1.5)
A 		1.4
(1)
A 		0.6
(-3)
A 		1
C 0.5
(-2.9)
A 		5.5
(0.6)
A 		1
(-2.6)
A 		8.8
(3)
A 		4.4
(-0.1)
A 		0.4
(-3)
A 		8
avr 0.9
(-3) 		2.6
(-0.9) 		1.1
(-2.8) 		5.8
(3) 		2.1
(-1.5) 		1.6
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10912
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.12 NCBI
Target Description Y9C9A.12 /REP_DB=WormBase Gene ID /WP=CE21348 /TR=Q9N2T1 /GB=AAF60924.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068277(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068277 NCBI Caenorhabditis elegans Y9C9A.12 (Y9C9A.12) mRNA, complete cds. 11/11 None
GENEFINDER00000021402 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4936992:4938001:-1 10/11 None
Y9C9A.12 ENSEMBL cdna:known chromosome:CEL140:IV:4936645:4938001:-1 gene:Y9C9A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4936650-4938007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.12
Entrez Gene 189417 Entrez gene
SwissProt Q9N2T1 EMBL-EBI
WormBase CE21348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500678 Y9C9A.12 [Caenorhabditis elegans] gb|AAF60924.1| Hypothetical protein Y9C9A.12 [Caenorhabditis elegans] 1.0E-161
blast NP_500678 Y9C9A.12 [Caenorhabditis elegans] gb|AAF60924.1| Hypothetical protein Y9C9A.12 [Caenorhabditis elegans] 1.0E-123
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 3.0E-36
blast CAB07340 Hypothetical protein F10A3.2 [Caenorhabditis elegans] ref|NP_507065.2| F10A3.2 [Caenorhabditis elegans] 1.0E-33
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 2.0E-24
blast CAB07340 Hypothetical protein F10A3.2 [Caenorhabditis elegans] ref|NP_507065.2| F10A3.2 [Caenorhabditis elegans] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-56
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.0E-42
Sequence
Target Sequence 
>C. ELEGANS:184854_AT
aaatctcaaagcccagtctgaaacatttcactattagaatctccgatgatataaagaaca
agaaccgcgatcaatgttttacaaggattttgaacactttgaattccaagagttgtttga
aagtatcaaatattgaatttggaaatttgaaacctgaagaattagcgatcgtgcttccga
gtttttacgctggtcacttagaagaaattgtgatatgccattgcaatttggattacgatt
tgactggaattgtttccctggagcagtggaaacaggcgaagtatttagatgcaacttggg
gatggaactcattgcccattgagtacctgtttcattttgttggatttaaaatcaatttca
aatcattttcactttcagatgccatcaaaataagagaggtactcgaaaaaacagttaatt
ttcaaagtgggatgtttatatttgaagaaacggatattgcagacattcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTCAAAGCCCAGTCTGAAACA 530 117 284 Antisense
CATTTCACTATTAGAATCTCCGATG 565 215 307 Antisense
GAACCGCGATCAATGTTTTACAAGG 457 345 345 Antisense
GAATTAGCGATCGTGCTTCCGAGTT 337 325 442 Antisense
TTCCGAGTTTTTACGCTGGTCACTT 399 699 458 Antisense
GGAATTGTTTCCCTGGAGCAGTGGA 256 533 529 Antisense
TGGGGATGGAACTCATTGCCCATTG 63 553 580 Antisense
ATTGCCCATTGAGTACCTGTTTCAT 494 7 594 Antisense
GTACCTGTTTCATTTTGTTGGATTT 107 459 606 Antisense
ATCATTTTCACTTTCAGATGCCATC 322 31 645 Antisense
AAACGGATATTGCAGACATTCTTGA 78 125 731 Antisense
Sequence Source Affymetrix Proprietary Database