[Home] | [Total List]

[184853_at]

Description C18A11.1 /REP_DB=WormBase Gene ID /WP=CE04032 /TR=Q18070 /GB=AAC69005.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 96      6grp_total > 76      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5382
1 2 3 4 range
A 541.7
(-2.6)
P 		250.4
(-2.9)
P 		194.8
(-3)
P 		5576.7
(3)
P 		5382
B 393.1
(-2.8)
P 		260.3
(-3)
P 		240.8
(-3)
P 		5014
(3)
P 		4773
C 472.9
(-2.8)
P 		319.8
(-2.9)
P 		275.5
(-3)
P 		5375.4
(3)
P 		5100
avr 469.2
(-2.7) 		276.8
(-3) 		237
(-3) 		5322
(3) 		5085

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1236
1 2 3 4 5 6 range
A 583.1
(-1.4)
P 		424.2
(-3)
P 		881.7
(1.5)
P 		980.7
(2.5)
P 		748.8
(0.2)
P 		1032.3
(3)
P 		608
B 636.9
(-2.8)
P 		593.7
(-3)
P 		799.5
(-1.8)
P 		993
(-0.8)
P 		865.1
(-1.5)
P 		1660.3
(3)
P 		1067
C 489
(-3)
P 		703.8
(-1.7)
P 		537.3
(-2.7)
P 		895.4
(-0.4)
P 		845.1
(-0.8)
P 		1445.1
(3)
P 		956
avr 569.7
(-3) 		573.9
(-3) 		739.5
(-1.7) 		956.4
(-0.1) 		819.7
(-1.1) 		1379.2
(3) 		810
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1018
1 2 3 4 range
A 197.2
(-1.9)
P 		54.4
(-3)
P 		50.9
(-3)
P 		816.3
(3)
P 		765
B 125.3
(-2.6)
P 		64.3
(-2.9)
P 		55.8
(-3)
P 		1068.5
(3)
P 		1013
C 156.5
(-2.5)
P 		91.9
(-3)
P 		96
(-3)
P 		906.4
(3)
P 		815
avr 159.7
(-2.4) 		70.2
(-3) 		67.6
(-3) 		930.4
(3) 		863

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 107.5
(-3)
P 		150.9
(-1.2)
P 		192
(0.5)
P 		248.7
(2.9)
P 		225.9
(1.9)
P 		251.3
(3)
P 		144
B 221.6
(-2.6)
P 		197.6
(-3)
P 		194.1
(-3)
P 		263
(-2)
P 		351.5
(-0.8)
P 		619.1
(3)
P 		425
C 181.3
(-2.2)
P 		214.8
(-1.7)
P 		136.8
(-3)
P 		180.1
(-2.3)
P 		273.4
(-0.6)
P 		483.7
(3)
P 		347
avr 170.1
(-3) 		187.8
(-2.6) 		174.3
(-2.9) 		230.6
(-1.7) 		283.6
(-0.6) 		451.4
(3) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17123
Sequence Type Exemplar sequence
Representative Public ID C18A11.1 NCBI
Target Description C18A11.1 /REP_DB=WormBase Gene ID /WP=CE04032 /TR=Q18070 /GB=AAC69005.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076957 NCBI Caenorhabditis elegans C18A11.1 (C18A11.1) mRNA, complete cds. 11/11 None
SNAP00000023792 ENSEMBL cdna:SNAP chromosome:CEL140:X:8069596:8070137:1 11/11 None
GENEFINDER00000023793 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8069596:8070133:1 11/11 None
C18A11.1 ENSEMBL cdna:known chromosome:CEL140:X:8069544:8070199:1 gene:C18A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8069594-8070136(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A11.1
Entrez Gene 182759 Entrez gene
SwissProt Q18070 EMBL-EBI
WormBase CE04032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69005 Hypothetical protein C18A11.1 [Caenorhabditis elegans] ref|NP_509358.1| C18A11.1 [Caenorhabditis elegans] 8.0E-68
blast AAC69005 Hypothetical protein C18A11.1 [Caenorhabditis elegans] ref|NP_509358.1| C18A11.1 [Caenorhabditis elegans] 3.0E-67
blast CAE70346 Hypothetical protein CBG16894 [Caenorhabditis briggsae] 8.0E-55
blast CAE70346 Hypothetical protein CBG16894 [Caenorhabditis briggsae] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:184853_AT
aaagccccgatcgattttgaggaagagtggtgcaagatttcaaatggaactttggaaata
aaatggtattattttccaacaactcaaagcttgaaaattgacatcgaaaaaatccaacaa
gtgaaaattcaaagtcaagctaaaagttatgtcaaaaactggggatccggagatttgtgt
gcatggtgggcatgtgatatgaaacgcaactttcgcagtcacccagaagagtttttcaat
gtaaaaattgacatcggcgaaacgttcaaaaaaggattcactgtacatgaactggacaat
ttcttgcctgcaattcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCCCGATCGATTTTGAGGAAG 692 123 19 Antisense
GTATTATTTTCCAACAACTCAAAGC 554 451 84 Antisense
TTATGTCAAAAACTGGGGATCCGGA 26 675 165 Antisense
GGATCCGGAGATTTGTGTGCATGGT 139 513 181 Antisense
GGTGGGCATGTGATATGAAACGCAA 20 501 203 Antisense
TGAAACGCAACTTTCGCAGTCACCC 496 571 218 Antisense
TCGCAGTCACCCAGAAGAGTTTTTC 653 591 231 Antisense
AATTGACATCGGCGAAACGTTCAAA 313 173 264 Antisense
GGATTCACTGTACATGAACTGGACA 699 507 292 Antisense
GAACTGGACAATTTCTTGCCTGCAA 349 349 307 Antisense
GACAATTTCTTGCCTGCAATTCGAA 273 365 313 Antisense
Sequence Source Affymetrix Proprietary Database