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[184852_at]

Description Y116A8A.6 /REP_DB=WormBase Gene ID /WP=CE23310 /TR=Q9U2W2 /GB=CAB55163.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 49.6
(0.4)
A 		71.6
(3)
A 		20.1
(-3)
A 		44.7
(-0.1)
A 		52
B 61.8
(0.9)
A 		73.5
(3)
A 		64.7
(1.5)
A 		39.3
(-3)
A 		34
C 39.2
(-3)
A 		44.6
(-2.1)
A 		53.6
(-0.7)
A 		76.4
(3)
A 		37
avr 50.2
(-1.6) 		63.2
(3) 		46.1
(-3) 		53.5
(-0.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 79
(0.3)
A 		74.7
(-0.4)
A 		64.6
(-2.2)
A 		59.7
(-3)
A 		94.8
(3)
A 		84.4
(1.2)
A 		35
B 89.9
(2.1)
A 		74.1
(0.2)
M 		56.4
(-1.9)
A 		97
(3)
M 		47.6
(-3)
A 		55.1
(-2.1)
A 		49
C 87.8
(-0.3)
A 		56.4
(-3)
A 		58.1
(-2.9)
A 		125
(3)
A 		75.8
(-1.3)
A 		71.5
(-1.7)
A 		69
avr 85.6
(1.5) 		68.4
(-1.5) 		59.7
(-3) 		93.9
(3) 		72.7
(-0.7) 		70.3
(-1.1) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 18.1
(3)
A 		15.5
(1.8)
A 		5.3
(-3)
A 		6.5
(-2.4)
A 		13
B 19.7
(3)
A 		18.2
(2.2)
A 		15
(0.5)
A 		8.4
(-3)
A 		11
C 13
(-2.8)
A 		12.8
(-3)
A 		18.7
(3)
A 		12.9
(-2.9)
A 		6
avr 16.9
(3) 		15.5
(1.9) 		13
(-0.1) 		9.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14.6
(-2.8)
A 		26.6
(2.2)
A 		14.1
(-3)
A 		15.1
(-2.6)
A 		28.6
(3)
A 		20.5
(-0.4)
A 		15
B 31.3
(3)
A 		24.7
(0.8)
M 		13.7
(-3)
A 		25.7
(1.1)
M 		19.3
(-1.1)
A 		20.5
(-0.7)
A 		18
C 32.6
(3)
A 		17.2
(-2.2)
A 		14.8
(-3)
A 		25.1
(0.5)
A 		24.5
(0.3)
A 		24
(0.1)
A 		18
avr 26.2
(3) 		22.8
(1.3) 		14.2
(-3) 		22
(0.9) 		24.1
(2) 		21.7
(0.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8897
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.6 NCBI
Target Description Y116A8A.6 /REP_DB=WormBase Gene ID /WP=CE23310 /TR=Q9U2W2 /GB=CAB55163.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070593 NCBI Caenorhabditis elegans Y116A8A.6 (Y116A8A.6) mRNA, complete cds. 11/11 A 
SNAP00000018649 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16826283:16827925:-1 10/11 None
GENEFINDER00000018658 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16825882:16827925:-1 11/11 None
Y116A8A.6 ENSEMBL cdna:known chromosome:CEL140:IV:16825882:16827925:-1 gene:Y116A8A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16825887-16827931(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8A.6
Entrez Gene 190986 Entrez gene
SwissProt Q9U2W2 EMBL-EBI
WormBase CE23310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55163 Hypothetical protein Y116A8A.6 [Caenorhabditis elegans] ref|NP_502994.1| Y116A8A.6 [Caenorhabditis elegans] 0.0
blast CAB55162 Hypothetical protein Y116A8A.4 [Caenorhabditis elegans] ref|NP_502993.1| Y116A8A.4 [Caenorhabditis elegans] 0.0
blast CAA21047 Hypothetical protein Y47H9B.2 [Caenorhabditis elegans] ref|NP_492993.2| Y47H9B.2 [Caenorhabditis elegans] 9.0E-16
blast CAA21047 Hypothetical protein Y47H9B.2 [Caenorhabditis elegans] ref|NP_492993.2| Y47H9B.2 [Caenorhabditis elegans] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 2.1E-79
Sequence
Target Sequence 
>C. ELEGANS:184852_AT
gagaacccaattcttacaacggagcccacgccagtcactactgaaagatctacagtttca
acaaccatttctacttcactcgaaacgactataatgcaggcttcgtcagcttcgccaatt
tcgagcaagccagccacaacgacagaaccatcgcctttgcaagcttcaagcaagccagct
acagaaccattgcttcagcctgaatcagctagaacagcctcatcatcagcttcgagcaag
cctgaagtccagacaacaatcccaacagaaatccaaactccatctctacgaacgtcgagt
ttgaagacttctacaacagtcactacgactactgtcaccacgacaactcccgatcctgca
actgttgattatggagatgatcatgacatgattggactggtcgatgaggatgatgaaatt
acggagagcaataatagagcacatagaatggatcttattcttggtcaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACCCAATTCTTACAACGGAGC 467 389 865 Antisense
CGTCAGCTTCGCCAATTTCGAGCAA 687 245 968 Antisense
CAATTTCGAGCAAGCCAGCCACAAC 241 181 980 Antisense
ACCATTGCTTCAGCCTGAATCAGCT 78 87 1050 Antisense
CAGCTAGAACAGCCTCATCATCAGC 454 203 1070 Antisense
CAGAAATCCAAACTCCATCTCTACG 408 205 1130 Antisense
AAACTCCATCTCTACGAACGTCGAG 429 127 1139 Antisense
AACGTCGAGTTTGAAGACTTCTACA 672 93 1155 Antisense
AACAGTCACTACGACTACTGTCACC 202 135 1179 Antisense
TACGACTACTGTCACCACGACAACT 323 649 1188 Antisense
AATGGATCTTATTCTTGGTCAATTT 427 161 1311 Antisense
Sequence Source Affymetrix Proprietary Database