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[184851_at]

Description T28A11.4 /REP_DB=WormBase Gene ID /WP=CE14287 /TR=P91520 /GB=AAC48114.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 1.7
(-3)
A 		6.9
(-2.5)
A 		3.3
(-2.8)
A 		64.8
(3)
A 		63
B 2.4
(-3)
A 		5.3
(-2.9)
A 		4
(-2.9)
A 		131.9
(3)
P 		130
C 1.7
(-3)
A 		7.6
(-2.6)
A 		2.7
(-2.9)
A 		102.8
(3)
P 		101
avr 1.9
(-3) 		6.6
(-2.7) 		3.3
(-2.9) 		99.8
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 7.2
(-2.7)
A 		2.3
(-3)
A 		21.6
(-2)
A 		41.6
(-1)
A 		15.6
(-2.3)
A 		119.5
(3)
P 		117
B 1.6
(-3)
A 		1.7
(-3)
A 		7.3
(-2.8)
A 		60.4
(-0.5)
P 		41.5
(-1.3)
M 		144.2
(3)
P 		143
C 12.2
(-2.7)
A 		7.4
(-2.9)
A 		5.3
(-3)
A 		54.6
(-0.9)
A 		29
(-2)
A 		143.9
(3)
P 		139
avr 7
(-2.9) 		3.8
(-3) 		11.4
(-2.7) 		52.2
(-0.8) 		28.7
(-1.9) 		135.9
(3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 0.6
(-3)
A 		1.5
(-2.4)
A 		0.9
(-2.8)
A 		9.5
(3)
A 		9
B 0.8
(-3)
A 		1.3
(-2.9)
A 		0.9
(-3)
A 		28.1
(3)
P 		27
C 0.6
(-3)
A 		2.2
(-2.4)
A 		1
(-2.9)
A 		17.3
(3)
P 		17
avr 0.7
(-3) 		1.7
(-2.7) 		0.9
(-2.9) 		18.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		0.8
(-3)
A 		4.7
(-2.2)
A 		10.5
(-0.9)
A 		4.7
(-2.2)
A 		29.1
(3)
P 		28
B 0.5
(-3)
A 		0.6
(-3)
A 		1.8
(-2.9)
A 		16
(-1.3)
P 		16.9
(-1.2)
M 		53.8
(3)
P 		53
C 4.5
(-2.6)
A 		2.3
(-2.9)
A 		1.4
(-3)
A 		11
(-1.8)
A 		9.4
(-2)
A 		48.2
(3)
P 		47
avr 2.1
(-2.9) 		1.2
(-3) 		2.6
(-2.8) 		12.5
(-1.4) 		10.3
(-1.7) 		43.7
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15395
Sequence Type Exemplar sequence
Representative Public ID T28A11.4 NCBI
Target Description T28A11.4 /REP_DB=WormBase Gene ID /WP=CE14287 /TR=P91520 /GB=AAC48114.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071502 NCBI Caenorhabditis elegans T28A11.4 (T28A11.4) mRNA, complete cds. 11/11 None
SNAP00000028215 ENSEMBL cdna:SNAP chromosome:CEL140:V:3273881:3274298:1 10/11 None
GENEFINDER00000028223 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3273881:3275900:1 11/11 None
T28A11.4 ENSEMBL cdna:known chromosome:CEL140:V:3273881:3274201:1 gene:T28A11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020324 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3273880-3274201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28A11.4
Entrez Gene 189011 Entrez gene
SwissProt P91520 EMBL-EBI
WormBase CE14287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 1.0E-114
blast AAC04397 Hypothetical protein C17B7.3 [Caenorhabditis elegans] ref|NP_503928.1| C17B7.3 [Caenorhabditis elegans] 1.0E-107
blast NP_503869 C36C5.12 [Caenorhabditis elegans] gb|AAB65934.1| Hypothetical protein C36C5.12 [Caenorhabditis elegans] 2.0E-66
blast NP_503903 T28A11.4 [Caenorhabditis elegans] gb|AAC48114.1| Hypothetical protein T28A11.4 [Caenorhabditis elegans] 5.0E-28
blast NP_503903 T28A11.4 [Caenorhabditis elegans] gb|AAC48114.1| Hypothetical protein T28A11.4 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.2E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503903.1 1 4-23
T28A11.4 1 4-23
SNAP00000028215 1 4-23
GENEFINDER00000028223 2 4-23,99-121
Sequence
Target Sequence 
>C. ELEGANS:184851_AT
ctttccttctggttgccatatttgcggtgtctgaggctgcagttgctaagaagaaagtta
aggaaggagagtcgcttgtcatcgactctttcgagaatggccaaggaatcgtgagaactg
ttgccgctggagaacagactttccacttcaacggacctgagaagggtgcattccttgatt
cggactggaaagaggttgacccatccaactatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCCTTCTGGTTGCCATATTTGC 239 223 35 Antisense
TGGTTGCCATATTTGCGGTGTCTGA 239 551 44 Antisense
CGGTGTCTGAGGCTGCAGTTGCTAA 109 243 59 Antisense
GGAAGGAGAGTCGCTTGTCATCGAC 79 533 96 Antisense
TCGACTCTTTCGAGAATGGCCAAGG 36 601 116 Antisense
AATCGTGAGAACTGTTGCCGCTGGA 304 169 141 Antisense
GGAGAACAGACTTTCCACTTCAACG 472 517 163 Antisense
ACTTTCCACTTCAACGGACCTGAGA 185 101 172 Antisense
ACGGACCTGAGAAGGGTGCATTCCT 156 95 185 Antisense
GGTGCATTCCTTGATTCGGACTGGA 175 499 199 Antisense
AAGAGGTTGACCCATCCAACTATCA 314 153 224 Antisense
Sequence Source Affymetrix Proprietary Database