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[184850_at]

Description F35F10.6 /REP_DB=WormBase Gene ID /WP=CE09931 /TR=Q9GYU1 /GB=AAF99933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 25      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 1.6
(-3)
A 		117.9
(-0.8)
M 		152
(-0.2)
P 		323.1
(3)
P 		322
B 5.4
(-3)
A 		151.7
(-0)
P 		138.2
(-0.3)
A 		301.3
(3)
P 		296
C 2.4
(-3)
A 		115.6
(-0.8)
P 		159.9
(0.1)
P 		311.1
(3)
P 		309
avr 3.1
(-3) 		128.4
(-0.6) 		150
(-0.1) 		311.8
(3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 4.3
(-3)
A 		120.5
(-0.1)
P 		179.9
(1.4)
P 		243.4
(3)
P 		102.4
(-0.5)
P 		213
(2.2)
P 		239
B 2
(-3)
A 		121.9
(0.1)
A 		233.4
(3)
P 		112.1
(-0.1)
P 		116.1
(-0)
P 		128.1
(0.3)
P 		231
C 1.3
(-3)
A 		69.6
(-1)
A 		191.6
(2.6)
P 		205.8
(3)
P 		136.8
(1)
P 		166.8
(1.9)
P 		205
avr 2.5
(-3) 		104
(0.1) 		201.6
(3) 		187.1
(2.6) 		118.4
(0.5) 		169.3
(2) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 0.6
(-3)
A 		25.6
(0.2)
M 		39.7
(2)
P 		47.3
(3)
P 		47
B 1.7
(-3)
A 		37.5
(0.4)
P 		32
(-0.1)
A 		64.2
(3)
P 		63
C 0.8
(-3)
A 		33.2
(0.5)
P 		55.7
(3)
P 		52.5
(2.7)
P 		55
avr 1
(-3) 		32.1
(0.5) 		42.5
(1.6) 		54.7
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 0.8
(-3)
A 		42.9
(1.1)
P 		39.2
(0.8)
P 		61.7
(3)
P 		30.9
(-0)
P 		51.9
(2)
P 		61
B 0.7
(-3)
A 		40.6
(1.3)
A 		56.7
(3)
P 		29.7
(0.1)
P 		47.2
(2)
P 		47.8
(2)
P 		56
C 0.5
(-3)
A 		21.2
(-0.8)
A 		48.8
(2.2)
P 		41.4
(1.4)
P 		44.3
(1.8)
P 		55.8
(3)
P 		55
avr 0.7
(-3) 		34.9
(1) 		48.2
(2.6) 		44.3
(2.1) 		40.8
(1.7) 		51.8
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15244
Sequence Type Exemplar sequence
Representative Public ID F35F10.6 NCBI
Target Description F35F10.6 /REP_DB=WormBase Gene ID /WP=CE09931 /TR=Q9GYU1 /GB=AAF99933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071509 NCBI Caenorhabditis elegans F35F10.6 (F35F10.6) mRNA, complete cds. 11/11 None
GENEFINDER00000011252 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3286484:3288940:-1 11/11 None
F35F10.6 ENSEMBL cdna:known chromosome:CEL140:V:3287903:3288940:-1 gene:F35F10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011241 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3287902-3288940(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F10.6
Entrez Gene 185311 Entrez gene
SwissProt Q9GYU1 EMBL-EBI
WormBase CE09931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99933 Hypothetical protein F35F10.6 [Caenorhabditis elegans] ref|NP_503910.1| F35F10.6 [Caenorhabditis elegans] 1.0E-118
blast AAF99933 Hypothetical protein F35F10.6 [Caenorhabditis elegans] ref|NP_503910.1| F35F10.6 [Caenorhabditis elegans] 1.0E-115
blast AAF99932 Hypothetical protein F35F10.7 [Caenorhabditis elegans] ref|NP_503909.1| F35F10.7 [Caenorhabditis elegans] 5.0E-89
blast AAF99932 Hypothetical protein F35F10.7 [Caenorhabditis elegans] ref|NP_503909.1| F35F10.7 [Caenorhabditis elegans] 9.0E-88
blast AAC27092 Hypothetical protein C04E12.6 [Caenorhabditis elegans] ref|NP_503933.1| C04E12.6 [Caenorhabditis elegans] 3.0E-63
blast AAC27092 Hypothetical protein C04E12.6 [Caenorhabditis elegans] ref|NP_503933.1| C04E12.6 [Caenorhabditis elegans] 4.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 6.8E-113
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 3.3E-80
Sequence
Target Sequence 
>C. ELEGANS:184850_AT
acagccgtttttgatgagtctttacagtatttttaccgtgatcgacgaaccagttgaagg
aaaacaaccaagttcagcagttttcgtctacgaggaattggcgaagtttggagatttttg
caagttgtttaaaatggaagaatcttatataaatgttgaccaagtagttcaagagattgc
gaacatacaatcaagatatgctattcacctgagctctcactcactaaaaaacacaatcca
gatcgtcagaactgcctttcccaatgggtatactcaaaacgataagaatggaaatgttcc
agaagggaataaggtcaagttcgatggagatgaaactgttatgaaaaccactgtcgattg
tgagcaacttgtcaaggatatcaaagagttcatggaggaggatagacagaagtatgggga
attggaaatccaaattatagaagagtcagaaagaaacctcgatggttatgcctacttcag
ttttctgaaatttgttccatgtggaaccatacaccttcgaatccctccattaaaagaaag
ttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCCGTTTTTGATGAGTCTTTAC 253 107 33 Antisense
GAGTCTTTACAGTATTTTTACCGTG 299 399 48 Antisense
TTACCGTGATCGACGAACCAGTTGA 65 683 65 Antisense
CAAGTTCAGCAGTTTTCGTCTACGA 92 185 101 Antisense
AGATATGCTATTCACCTGAGCTCTC 64 67 226 Antisense
GAGCTCTCACTCACTAAAAAACACA 548 385 243 Antisense
GAACTGCCTTTCCCAATGGGTATAC 672 347 281 Antisense
AAACCACTGTCGATTGTGAGCAACT 562 125 377 Antisense
AAACCTCGATGGTTATGCCTACTTC 28 127 486 Antisense
CATGTGGAACCATACACCTTCGAAT 511 207 530 Antisense
GAATCCCTCCATTAAAAGAAAGTTG 97 329 551 Antisense
Sequence Source Affymetrix Proprietary Database