[Home] | [Total List]

[184848_at]

Description F20D12.2 /REP_DB=WormBase Gene ID /WP=CE04432 /TR=Q19643 /GB=AAA81675.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 527
1 2 3 4 range
A 764.2
(3)
P 		301.4
(-2.9)
P 		294.3
(-3)
P 		514.1
(-0.2)
P 		470
B 738.9
(3)
P 		288.3
(-2.4)
P 		237.4
(-3)
P 		452
(-0.4)
P 		502
C 627.7
(3)
P 		327.8
(-3)
A 		398.5
(-1.6)
P 		485.4
(0.2)
P 		300
avr 710.3
(3) 		305.8
(-3) 		310.1
(-2.9) 		483.8
(-0.4) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 383.9
(-1.9)
P 		471.4
(-0.5)
P 		312.3
(-3)
P 		389
(-1.8)
P 		410.8
(-1.4)
P 		689.2
(3)
P 		377
B 543.2
(0.7)
P 		485.8
(-1.4)
P 		529.8
(0.2)
P 		440.1
(-3)
P 		490.3
(-1.2)
P 		607
(3)
P 		167
C 573.6
(2.6)
P 		587.4
(2.9)
P 		488
(0.7)
P 		543.9
(1.9)
P 		325.9
(-3)
P 		592.2
(3)
P 		266
avr 500.2
(-0.5) 		514.9
(-0.1) 		443.4
(-2.1) 		457.7
(-1.7) 		409
(-3) 		629.5
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 278.3
(3)
P 		65.4
(-3)
P 		76.9
(-2.7)
P 		75.3
(-2.7)
P 		213
B 235.6
(3)
P 		71.2
(-2.5)
P 		55
(-3)
P 		96.3
(-1.6)
P 		181
C 207.8
(3)
P 		94.2
(-2.4)
A 		138.9
(-0.3)
P 		81.8
(-3)
P 		126
avr 240.6
(3) 		76.9
(-3) 		90.3
(-2.5) 		84.5
(-2.7) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 70.8
(-2.8)
P 		167.6
(3)
P 		68
(-3)
P 		98.7
(-1.2)
P 		124
(0.4)
P 		167.8
(3)
P 		100
B 189
(1)
P 		161.7
(-0.5)
P 		128.7
(-2.3)
P 		116.6
(-3)
P 		199.2
(1.5)
P 		226.3
(3)
P 		110
C 212.6
(3)
P 		179.2
(1.1)
P 		124.2
(-2)
P 		109.4
(-2.8)
P 		105.5
(-3)
P 		198.2
(2.2)
P 		107
avr 157.5
(0.4) 		169.5
(1.1) 		107
(-3) 		108.2
(-2.9) 		142.9
(-0.6) 		197.4
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10257
Sequence Type Exemplar sequence
Representative Public ID F20D12.2 NCBI
Target Description F20D12.2 /REP_DB=WormBase Gene ID /WP=CE04432 /TR=Q19643 /GB=AAA81675.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068927 NCBI Caenorhabditis elegans F20D12.2 (F20D12.2) mRNA, complete cds. 11/11 None
SNAP00000004279 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7948660:7953408:1 11/11 None
GENEFINDER00000004284 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7948660:7953408:1 11/11 None
F20D12.2 ENSEMBL cdna:known chromosome:CEL140:IV:7948657:7953531:1 gene:F20D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7948665-7953414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D12.2
Entrez Gene 177589 Entrez gene
SwissProt Q19643 EMBL-EBI
WormBase CE04432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81675 Hypothetical protein F20D12.2 [Caenorhabditis elegans] ref|NP_501328.1| F20D12.2 [Caenorhabditis elegans] 0.0
blast CAE70919 Hypothetical protein CBG17718 [Caenorhabditis briggsae] 0.0
blast XP_215376 PREDICTED: similar to mKIAA0572 protein [Rattus norvegicus] 3.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR005062 EMBL-EBI SAC3/GANP family 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184848_AT
cccaattctcaatcgaccttcaaatcatattcaagtaataatgttcaaaagaagacgcca
acatcgtattgttaatgatatgtttcaaaaatggaaatcgtatactaagaagcgaaaggc
gttgaagagaatagcagaagagaagcagaaacgagagaatgaattcttttcgagattcaa
caaatgtgcactgattgagacaagattcaaattcgatgctcctgatgattggatgaagat
aaagagaagaagaagtgataatcatcagctgaataaaaaacctgtgaatgattcacaaat
aacggtccactctccggatacatcaatttccattgcccgtagacatctacaagactggga
acctgaggctgtactcccaactgagctgaaggaaaagatcaaaagaaaacgggaatcgtt
cgaaaaagtttttgaagagcactcaaagaagaagaaacaagatgaagaattgataagtaa
tgaagcaaaagcaaactctgttcatatgaaacaggtgtctgtagaagcagatgctcttct
cgatgaaacactccgatacacagcagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAATTCTCAATCGACCTTCAAAT 669 257 2745 Antisense
GAAGACGCCAACATCGTATTGTTAA 181 339 2795 Antisense
CAAATTCGATGCTCCTGATGATTGG 131 195 2952 Antisense
ATTCACAAATAACGGTCCACTCTCC 454 11 3035 Antisense
GTCCACTCTCCGGATACATCAATTT 649 477 3049 Antisense
TCAATTTCCATTGCCCGTAGACATC 256 633 3067 Antisense
GACTGGGAACCTGAGGCTGTACTCC 382 373 3097 Antisense
GCTGTACTCCCAACTGAGCTGAAGG 552 293 3112 Antisense
GCAAAAGCAAACTCTGTTCATATGA 349 319 3229 Antisense
GATGCTCTTCTCGATGAAACACTCC 419 413 3274 Antisense
GAAACACTCCGATACACAGCAGAGC 542 355 3289 Antisense
Sequence Source Affymetrix Proprietary Database