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[184847_at] 7TM chemoreceptor, srg family

Description C24B9.12 /REP_DB=WormBase Gene ID /WP=CE17454 /TR=O76441 /GB=AAC19246.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 17      6grp_cgc > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 7.2
(-3)
A 		44.8
(-1.4)
A 		43
(-1.4)
A 		145.6
(3)
P 		138
B 46.1
(-3)
A 		61.4
(-1.6)
A 		54.4
(-2.2)
A 		111.8
(3)
P 		66
C 44.4
(-3)
A 		65.5
(-1.9)
A 		58.8
(-2.3)
A 		160.1
(3)
P 		116
avr 32.6
(-3) 		57.2
(-1.6) 		52.1
(-1.9) 		139.2
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 65.1
(3)
A 		36.4
(-2.9)
A 		43.5
(-1.5)
A 		37.2
(-2.8)
A 		36.1
(-3)
A 		40.2
(-2.2)
A 		29
B 74
(3)
A 		46.5
(0.6)
A 		8.5
(-2.7)
A 		5.6
(-3)
A 		47.7
(0.7)
A 		5.3
(-3)
A 		69
C 48.1
(-1.4)
A 		57.9
(2)
A 		43.5
(-3)
A 		60.9
(3)
A 		45.4
(-2.3)
A 		48.9
(-1.1)
A 		17
avr 62.4
(3) 		46.9
(-0) 		31.8
(-2.9) 		34.6
(-2.4) 		43.1
(-0.7) 		31.5
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.6
(-3)
A 		9.7
(-0.7)
A 		11.2
(-0.2)
A 		21.3
(3)
P 		19
B 14.7
(-1.9)
A 		15.2
(-1.6)
A 		12.6
(-3)
A 		23.8
(3)
P 		11
C 14.7
(-3)
A 		18.8
(-1)
A 		20.5
(-0.2)
A 		27
(3)
P 		12
avr 10.7
(-3) 		14.6
(-1.2) 		14.8
(-1.2) 		24
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12
(1.3)
A 		13
(3)
A 		9.5
(-2.8)
A 		9.4
(-3)
A 		10.9
(-0.5)
A 		9.8
(-2.3)
A 		4
B 25.8
(3)
A 		15.5
(0.5)
A 		2.1
(-2.9)
A 		1.5
(-3)
A 		19.4
(1.4)
A 		2
(-2.9)
A 		24
C 17.8
(3)
A 		17.7
(2.9)
A 		11.1
(-3)
A 		12.2
(-2)
A 		14.7
(0.2)
A 		16.4
(1.7)
A 		7
avr 18.5
(3) 		15.4
(1.3) 		7.6
(-3) 		7.7
(-2.9) 		15
(1.1) 		9.4
(-2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15696
Sequence Type Exemplar sequence
Representative Public ID C24B9.12 NCBI
Target Description C24B9.12 /REP_DB=WormBase Gene ID /WP=CE17454 /TR=O76441 /GB=AAC19246.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071344 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-62) (srg-62) mRNA, complete cds. 11/11 None
SNAP00000038285 ENSEMBL cdna:SNAP chromosome:CEL140:V:2740271:2743291:-1 11/11 None
GENEFINDER00000038291 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2740271:2746085:-1 11/11 None
C24B9.12 ENSEMBL cdna:known chromosome:CEL140:V:2740271:2742225:-1 gene:C24B9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2740429-2742225(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-62
Ensembl C24B9.12
Entrez Gene 182844 Entrez gene
SwissProt O76441 EMBL-EBI
WormBase CE33273 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19246 Serpentine receptor, class g (gamma) protein 62 [Caenorhabditis elegans] ref|NP_503745.2| Serpentine Receptor, class G (gamma) family member (srg-62) [Caenorhabditis elegans] 1.0E-175
blast AAC19246 Serpentine receptor, class g (gamma) protein 62 [Caenorhabditis elegans] ref|NP_503745.2| Serpentine Receptor, class G (gamma) family member (srg-62) [Caenorhabditis elegans] 1.0E-171
blast CAE66764 Hypothetical protein CBG12118 [Caenorhabditis briggsae] 1.0E-120
blast AAC19246 Serpentine receptor, class g (gamma) protein 62 [Caenorhabditis elegans] ref|NP_503745.2| Serpentine Receptor, class G (gamma) family member (srg-62) [Caenorhabditis elegans] 1.0E-119
blast CAE66764 Hypothetical protein CBG12118 [Caenorhabditis briggsae] 1.0E-118
blast CAB01907 Hypothetical protein ZK678.6 [Caenorhabditis elegans] ref|NP_510589.2| Serpentine Receptor, class G (gamma) family member (srg-64) [Caenorhabditis elegans] 1.0E-113
blast CAB01907 Hypothetical protein ZK678.6 [Caenorhabditis elegans] ref|NP_510589.2| Serpentine Receptor, class G (gamma) family member (srg-64) [Caenorhabditis elegans] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503745.2 7 20-42,54-76,108-130,137-155,190-212,233-250,270-292
C24B9.12 7 20-42,54-76,108-130,137-155,190-212,233-250,270-292
SNAP00000038285 7 45-67,76-98,130-152,159-177,212-234,255-272,292-314
GENEFINDER00000038291 11 13-35,56-78,103-125,185-207,251-273,282-304,336-358,365-383,417-439,549-566,586-608
Sequence
Target Sequence 
>C. ELEGANS:184847_AT
tcctagcatggtcttcgtcttgaaagccatagaatctacatttccatggcttttgacttg
gctgaaatatcttccatattggtttttccacatgcatttctggacggcagcactgttgac
cattcatcgattgacatcgattttgtttccctatcaatatgaaaacttttggtcccgttg
gaacctgcttgtatttctagtggtctgtttcttcagtcacctccctaaatatctttggga
tgggttcctctacgaagtgtacatagtaaatgggcaacttatctgcatcaactttccaac
tacactggaccaggcaatcaatgtggttgccgcgttttcggcgatctacttcctattgaa
cttggccattgggctgagcacagcgattttggcatcgaaaaaagttgaagttgcatcttc
atccaaaatgaacatcaaaaagaagctcactaagatttccctgacctactcagtcgtcta
caccgcagaagttatttggagtgtgctgaactctctcaactcttttttccacttcttacc
gccatttttcgtgaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTAGCATGGTCTTCGTCTTGAAA 150 593 255 Antisense
TCTGGACGGCAGCACTGTTGACCAT 96 607 353 Antisense
GACATCGATTTTGTTTCCCTATCAA 536 365 387 Antisense
TAGTGGTCTGTTTCTTCAGTCACCT 301 653 452 Antisense
TCAGTCACCTCCCTAAATATCTTTG 665 623 467 Antisense
GATGGGTTCCTCTACGAAGTGTACA 669 403 493 Antisense
TTATCTGCATCAACTTTCCAACTAC 47 681 533 Antisense
TTCGGCGATCTACTTCCTATTGAAC 324 695 591 Antisense
GAAGCTCACTAAGATTTCCCTGACC 460 339 696 Antisense
GGAGTGTGCTGAACTCTCTCAACTC 372 517 752 Antisense
TCTTACCGCCATTTTTCGTGAAACT 260 615 788 Antisense
Sequence Source Affymetrix Proprietary Database