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[184846_at]

Description B0205.10 /REP_DB=WormBase Gene ID /WP=CE17324 /TR=O61747 /GB=AAC16986.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.3
(-3)
A 		3.8
(3)
A 		2.9
(-0.6)
A 		3.2
(0.6)
A 		2
B 4.2
(0.2)
A 		2.1
(-3)
A 		3.7
(-0.6)
A 		6.1
(3)
A 		4
C 1.2
(-2.1)
A 		2.4
(3)
A 		1
(-3)
A 		2.1
(1.7)
A 		1
avr 2.6
(-2.5) 		2.8
(-1.6) 		2.5
(-3) 		3.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 1.4
(-3)
A 		10.6
(-2.8)
A 		2.5
(-3)
A 		50.1
(-2.1)
A 		89.6
(-1.4)
P 		337.8
(3)
P 		336
B 8.7
(-2.8)
A 		2.4
(-3)
A 		8.5
(-2.8)
A 		33.9
(-2.1)
A 		72.3
(-1.1)
A 		223.6
(3)
P 		221
C 3.5
(-2.9)
A 		1.8
(-3)
A 		3.3
(-3)
A 		38.4
(-1.9)
A 		134.4
(1)
P 		199
(3)
P 		197
avr 4.5
(-3) 		4.9
(-3) 		4.8
(-3) 		40.8
(-2.1) 		98.8
(-0.7) 		253.5
(3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(3)
A 		0.8
(3)
A 		0.8
(3)
A 		0.5
(-3)
A 		0
B 1.4
(3)
A 		0.5
(-3)
A 		0.9
(-0.3)
A 		1.3
(2.3)
A 		1
C 0.4
(-3)
A 		0.7
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0
avr 0.9
(3) 		0.7
(-3) 		0.7
(-3) 		0.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 0.3
(-3)
A 		3.8
(-2.7)
A 		0.5
(-3)
A 		12.7
(-2.1)
A 		27
(-1)
P 		82.3
(3)
P 		82
B 3
(-2.8)
A 		0.8
(-3)
A 		2.1
(-2.9)
A 		9
(-2.4)
A 		29.4
(-0.9)
A 		83.4
(3)
P 		83
C 1.3
(-2.9)
A 		0.6
(-3)
A 		0.9
(-3)
A 		7.7
(-2.4)
A 		43.5
(0.9)
P 		66.6
(3)
P 		66
avr 1.5
(-3) 		1.7
(-3) 		1.2
(-3) 		9.8
(-2.3) 		33.3
(-0.5) 		77.4
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.881
Sequence Type Exemplar sequence
Representative Public ID B0205.10 NCBI
Target Description B0205.10 /REP_DB=WormBase Gene ID /WP=CE17324 /TR=O61747 /GB=AAC16986.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060403 NCBI Caenorhabditis elegans B0205.10 (B0205.10) mRNA, complete cds. 11/11 None
SNAP00000024661 ENSEMBL cdna:SNAP chromosome:CEL140:I:10716954:10718458:1 11/11 None
GENEFINDER00000024675 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10716954:10718439:1 11/11 None
B0205.10.1 ENSEMBL cdna:known chromosome:CEL140:I:10716484:10718485:1 gene:B0205.10 11/11 None
B0205.10.2 ENSEMBL cdna:known chromosome:CEL140:I:10716525:10718458:1 gene:B0205.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10716884-10718389(+) 93.13 100.0
Public Domain and Genome References
Gene Title
Ensembl B0205.10
Entrez Gene 172973 Entrez gene
SwissProt O61747 EMBL-EBI
WormBase CE17324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16986 Hypothetical protein B0205.10 [Caenorhabditis elegans] ref|NP_492804.1| B0205.10 [Caenorhabditis elegans] 1.0E-101
blast CAB54186 Hypothetical protein B0379.7 [Caenorhabditis elegans] ref|NP_740910.1| B0379.7 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492804.1 1 2-18
B0205.10.1 1 2-18
B0205.10.2 1 2-18
SNAP00000024661 1 2-18
GENEFINDER00000024675 1 2-18
Sequence
Target Sequence 
>C. ELEGANS:184846_AT
aagggagaaagcgcttcatccactcctcaaactccaaatgatccagaaaccggagtccaa
acagcaaacgagattcgcaacgatgctccagaatccaatgtcaacacggcattgtcgatt
cgctctccggctcaagttgccccagaacctgatgtcaaaacagctgccgaagacaagaac
gatgttccggaatctgatgtaaagactgctgctgaagacaagaacgatgttcctgagtct
ggagtcaaaacagctgttgaggttaagaatgatgctcctgaatctgatgtcaagacggct
actgaggcaaacggtggtgcacctgaatctggagtgatcactgcaactgaacttggcgca
gagcagaaagcaaatccttctgaatctcagggctcctcggcagtttcgaccgctgctagc
aacgcttcgaagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGGAGAAAGCGCTTCATCCACTC 23 161 862 Antisense
ATCCACTCCTCAAACTCCAAATGAT 697 39 879 Antisense
ACGAGATTCGCAACGATGCTCCAGA 553 93 929 Antisense
TCAACACGGCATTGTCGATTCGCTC 13 631 962 Antisense
TCAAGTTGCCCCAGAACCTGATGTC 494 631 993 Antisense
GAATGATGCTCCTGAATCTGATGTC 565 331 1128 Antisense
GACGGCTACTGAGGCAAACGGTGGT 52 375 1155 Antisense
ACGGTGGTGCACCTGAATCTGGAGT 313 95 1172 Antisense
GGAGTGATCACTGCAACTGAACTTG 339 517 1192 Antisense
AATCCTTCTGAATCTCAGGGCTCCT 417 167 1234 Antisense
CGCTGCTAGCAACGCTTCGAAGAAG 426 255 1272 Antisense
Sequence Source Affymetrix Proprietary Database