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[184845_at]

Description F53E10.1 /REP_DB=WormBase Gene ID /WP=CE10920 /TR=P91321 /GB=AAB42288.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 61      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 36      6grp_total > 51      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1139
1 2 3 4 range
A 1338.9
(-2.6)
P 		1348.6
(-2.6)
P 		1300.2
(-3)
P 		1947.7
(3)
P 		648
B 1490.2
(-1)
P 		1167.8
(-2.7)
P 		1103.7
(-3)
P 		2242.4
(3)
P 		1139
C 1473
(-0.8)
P 		1172
(-3)
P 		1183.6
(-2.9)
P 		1991.4
(3)
P 		819
avr 1434
(-1.3) 		1229.5
(-2.8) 		1195.8
(-3) 		2060.5
(3) 		865

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2354
1 2 3 4 5 6 range
A 4075.8
(0.7)
P 		3849.1
(0.1)
P 		4991.1
(3)
P 		4702.7
(2.3)
P 		3954.2
(0.4)
P 		2637
(-3)
P 		2354
B 3682.6
(-1.3)
P 		4051.9
(0.2)
P 		4660.1
(2.6)
P 		4764.2
(3)
P 		4221.7
(0.8)
P 		3250.4
(-3)
P 		1514
C 3493.2
(-1.6)
P 		4292.3
(1.4)
P 		4206.3
(1.1)
P 		4708.4
(3)
P 		3117.3
(-3)
P 		3129
(-3)
P 		1591
avr 3750.5
(-0.4) 		4064.4
(0.7) 		4619.2
(2.6) 		4725.1
(3) 		3764.4
(-0.4) 		3005.5
(-3) 		1720
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 487.5
(3)
P 		292.7
(-2.8)
P 		339.9
(-1.4)
P 		285.1
(-3)
P 		202
B 475.2
(2.9)
P 		288.4
(-2.1)
P 		255.7
(-3)
P 		477.8
(3)
P 		222
C 487.6
(3)
P 		337
(-3)
P 		412.5
(0)
P 		335.8
(-3)
P 		152
avr 483.4
(3) 		306
(-3) 		336
(-2) 		366.2
(-1) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1073
1 2 3 4 5 6 range
A 751.3
(-2.1)
P 		1368.9
(3)
P 		1086.9
(0.7)
P 		1192.7
(1.5)
P 		1193.2
(1.5)
P 		642
(-3)
P 		727
B 1281.4
(-1.5)
P 		1348.7
(-0.8)
P 		1131.6
(-3)
P 		1261.9
(-1.7)
P 		1715.2
(3)
P 		1212
(-2.2)
P 		584
C 1294.8
(2.8)
P 		1309.7
(3)
P 		1070.6
(-1)
P 		946.9
(-3)
P 		1008.7
(-2)
P 		1047.5
(-1.3)
P 		363
avr 1109.2
(-0.7) 		1342.4
(3) 		1096.4
(-0.9) 		1133.8
(-0.3) 		1305.7
(2.4) 		967.2
(-3) 		375
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15361
Sequence Type Exemplar sequence
Representative Public ID F53E10.1 NCBI
Target Description F53E10.1 /REP_DB=WormBase Gene ID /WP=CE10920 /TR=P91321 /GB=AAB42288.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071315 NCBI Caenorhabditis elegans F53E10.1 (F53E10.1) mRNA, complete cds. 11/11 None
F53E10.1.2 ENSEMBL cdna:known chromosome:CEL140:V:2615580:2618318:1 gene:F53E10.1 11/11 None
F53E10.1.1 ENSEMBL cdna:known chromosome:CEL140:V:2615617:2618381:1 gene:F53E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2615635-2618292(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53E10.1
Entrez Gene 178729 Entrez gene
SwissProt P91321 EMBL-EBI
WormBase CE10920 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17660.1.S1_AT similar to MOCO sulphurase C-terminal domain containing 1 cfa
CANINE_2:CFAAFFX.17661.1.S1_S_AT similar to MOCO sulphurase C-terminal domain containing 1 cfa
Protein Similarities
Method ID Description E-Value
blast AAB42288 Hypothetical protein F53E10.1 [Caenorhabditis elegans] ref|NP_503716.1| F53E10.1 [Caenorhabditis elegans] 0.0
blast CAB05497 Hypothetical protein F22B8.7 [Caenorhabditis elegans] ref|NP_507051.2| F22B8.7 [Caenorhabditis elegans] 1.0E-171
blast CAE62510 Hypothetical protein CBG06615 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR005303 EMBL-EBI MOSC N-terminal beta barrel domain 2.0E-47
Pfam IPR005302 EMBL-EBI MOSC domain 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:184845_AT
atggacgaaccattcgagccacacttttcgacaatttgcaacaggatggctatgactgtg
gagatgaagttgctaagttgttgtctgattatattgaagagccaaattatcgactgcttt
tctcgaaagaaggactttacaccgaaagaacgtgtattcccgatgatcaatggtggaata
ctccagtgccaaagagaaaggacaactctggcttcaccgacttggcaccatttctcatcg
ctactgaagcttcactaaaagctgtcaatgagaaattggataagaaagtgacgatgcgca
acttccgtccatcaatctacatcgaaggttgcgccgcgtgggacgaggacaaatgggccg
aaattcgcatcggagaagcgcatctcgaatgctttgcaccgtgtactcgctgcgtcctga
ctacggttgaccccgaaaaaggagaaatgagcaaggagatgcagccactgaaaaagctga
gagagttccggttggctccggagggaaaaatgagtaaggctcataaggatagcccagtgt
tcggtgtgtatgcaggaaccgtcaacgaggcgtatatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACGAACCATTCGAGCCACACT 628 51 407 Antisense
GAGCCACACTTTTCGACAATTTGCA 195 385 422 Antisense
GAAGTTGCTAAGTTGTTGTCTGATT 550 337 472 Antisense
AAGAACGTGTATTCCCGATGATCAA 144 153 552 Antisense
GAGAAAGGACAACTCTGGCTTCACC 139 393 600 Antisense
ACCATTTCTCATCGCTACTGAAGCT 130 85 633 Antisense
AAGTGACGATGCGCAACTTCCGTCC 376 157 692 Antisense
TCGAATGCTTTGCACCGTGTACTCG 543 599 791 Antisense
AGCTGAGAGAGTTCCGGTTGGCTCC 199 81 881 Antisense
AGGATAGCCCAGTGTTCGGTGTGTA 388 57 932 Antisense
GGAACCGTCAACGAGGCGTATATCC 197 531 961 Antisense
Sequence Source Affymetrix Proprietary Database