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[184844_at]

Description C35A11.3 /REP_DB=WormBase Gene ID /WP=CE08582 /TR=O16545 /GB=AAB66040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 34.5
(-2.6)
A 		30.8
(-3)
A 		50.7
(-0.7)
A 		82.8
(3)
A 		52
B 41.8
(-0.7)
A 		40.5
(-1.5)
A 		48.3
(3)
A 		37.8
(-3)
A 		11
C 48
(-0.9)
A 		14.3
(-3)
A 		36.1
(-1.6)
A 		110.4
(3)
P 		96
avr 41.4
(-1.4) 		28.5
(-3) 		45
(-1) 		77
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 41.5
(0.1)
A 		59.6
(1.9)
A 		21
(-2)
A 		29.6
(-1.2)
A 		70
(3)
A 		11.7
(-3)
A 		58
B 39.5
(3)
A 		37.6
(2.7)
A 		38
(2.7)
A 		4.1
(-3)
A 		20.4
(-0.2)
A 		10.1
(-2)
A 		35
C 38.3
(1.2)
A 		19.5
(-2.6)
A 		40.4
(1.7)
A 		46.9
(3)
A 		17.6
(-3)
A 		36
(0.8)
A 		29
avr 39.8
(3) 		38.9
(2.7) 		33.1
(1) 		26.9
(-0.8) 		36
(1.9) 		19.3
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.6
(2.4)
A 		6.7
(-3)
A 		13.3
(3)
A 		12.1
(1.9)
A 		7
B 13.3
(3)
A 		10
(-0.8)
A 		11.2
(0.6)
A 		8.1
(-3)
A 		5
C 15.9
(1.9)
A 		4.1
(-3)
A 		12.6
(0.5)
A 		18.6
(3)
P 		15
avr 13.9
(3) 		6.9
(-3) 		12.4
(1.7) 		12.9
(2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.6
(-1.4)
A 		21.2
(3)
A 		4.6
(-2.4)
A 		7.5
(-1.5)
A 		21.1
(3)
A 		2.8
(-3)
A 		18
B 13.8
(3)
A 		12.5
(2.4)
A 		9.2
(0.8)
A 		1.1
(-3)
A 		8.3
(0.4)
A 		3.8
(-1.7)
A 		13
C 14.2
(3)
A 		5.9
(-2.9)
A 		10.3
(0.2)
A 		9.4
(-0.4)
A 		5.7
(-3)
A 		12
(1.4)
A 		9
avr 11.9
(1.9) 		13.2
(3) 		8
(-1.3) 		6
(-3) 		11.7
(1.8) 		6.2
(-2.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12349
Sequence Type Exemplar sequence
Representative Public ID C35A11.3 NCBI
Target Description C35A11.3 /REP_DB=WormBase Gene ID /WP=CE08582 /TR=O16545 /GB=AAB66040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072027(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072027 NCBI Caenorhabditis elegans C35A11.3 (C35A11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000020001 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5372230:5375166:1 10/11 None
C35A11.3 ENSEMBL cdna:known chromosome:CEL140:V:5372230:5377312:1 gene:C35A11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019997 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5372229-5377312(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A11.3
Entrez Gene 183228 Entrez gene
SwissProt O16545 EMBL-EBI
WormBase CE08582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66040 Hypothetical protein C35A11.3 [Caenorhabditis elegans] ref|NP_504428.1| C35A11.3 [Caenorhabditis elegans] 1.0E-152
blast AAB66040 Hypothetical protein C35A11.3 [Caenorhabditis elegans] ref|NP_504428.1| C35A11.3 [Caenorhabditis elegans] 1.0E-108
blast CAB04435 Hypothetical protein F49C5.7 [Caenorhabditis elegans] ref|NP_496682.1| F49C5.7 [Caenorhabditis elegans] 2.0E-52
blast CAB04435 Hypothetical protein F49C5.7 [Caenorhabditis elegans] ref|NP_496682.1| F49C5.7 [Caenorhabditis elegans] 8.0E-51
blast AAK84614 Hypothetical protein Y53G8AL.3 [Caenorhabditis elegans] ref|NP_497676.1| Y53G8AL.3 [Caenorhabditis elegans] 5.0E-23
blast AAK84614 Hypothetical protein Y53G8AL.3 [Caenorhabditis elegans] ref|NP_497676.1| Y53G8AL.3 [Caenorhabditis elegans] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:184844_AT
tatgctttaccccgaaccaagctaccttcagcagaaatagcaccctgatccaaggcacgt
gcatcaccaagccgttcactggatacgctatggctatccggcgccaagatgacctggaag
aacgggactactcgaagattctcaccttcaagccaattgtgttctatgagaaggccaacg
agacaggaccacacttgtacttggaaaaccaccgcgggctgaatgtgatcttcgtcttct
acaacaacaagaagaacgtcgtcattctggatgcaagtcagaaaaacaactgcgccaacg
acaaagccgattgcctacccttcgagtaccgggacatcaatgcattcatataccacatat
gctgggacagggacacgcatgcggacggaaacttcatcgatgctttgcttgagaaaatgc
tgtcaaaaaatttgttacttttttcagcaacaattactttcagaaaggtcaaaactgatc
ccttcatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCTTTACCCCGAACCAAGCTAC 309 625 386 Antisense
TAGCACCCTGATCCAAGGCACGTGC 676 651 423 Antisense
CACCAAGCCGTTCACTGGATACGCT 306 201 450 Antisense
TATCCGGCGCCAAGATGACCTGGAA 591 653 480 Antisense
CGGGACTACTCGAAGATTCTCACCT 185 243 508 Antisense
AACCACCGCGGGCTGAATGTGATCT 228 145 592 Antisense
GAACGTCGTCATTCTGGATGCAAGT 147 349 639 Antisense
TGCGCCAACGACAAAGCCGATTGCC 32 585 676 Antisense
CTACCCTTCGAGTACCGGGACATCA 22 225 700 Antisense
GAAACTTCATCGATGCTTTGCTTGA 269 357 773 Antisense
GGTCAAAACTGATCCCTTCATTTCA 427 503 852 Antisense
Sequence Source Affymetrix Proprietary Database