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[184842_at]

Description F16G10.3 /REP_DB=WormBase Gene ID /WP=CE19392 /TR=O76589 /GB=AAC26271.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 48.7
(-0.5)
A 		78.9
(3)
A 		27.3
(-3)
A 		27.1
(-3)
A 		52
B 45.5
(3)
A 		14.1
(-2)
A 		13.5
(-2.1)
A 		8
(-3)
A 		38
C 36.6
(-0.4)
A 		53.4
(1.2)
A 		8.4
(-3)
A 		73.4
(3)
A 		65
avr 43.6
(2) 		48.8
(3) 		16.4
(-3) 		36.2
(0.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 33.2
(-0.3)
A 		24.1
(-1.1)
A 		3.6
(-3)
A 		9.4
(-2.5)
A 		10.2
(-2.4)
A 		68.7
(3)
A 		65
B 16.9
(-1.9)
A 		31.9
(1)
A 		10.9
(-3)
A 		28.4
(0.3)
A 		42.6
(3)
A 		16.6
(-1.9)
A 		32
C 42.8
(2.4)
A 		45
(2.8)
A 		10.1
(-2.5)
A 		46.6
(3)
A 		6.6
(-3)
A 		29.7
(0.5)
A 		40
avr 31
(1.5) 		33.7
(2.1) 		8.2
(-3) 		28.1
(1) 		19.8
(-0.7) 		38.3
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.7
(3)
A 		17.1
(2.7)
A 		7.1
(-1.6)
A 		4
(-3)
A 		14
B 14.5
(3)
A 		3.5
(-2.2)
A 		3.1
(-2.3)
A 		1.7
(-3)
A 		13
C 12.1
(1.4)
A 		15.4
(3)
A 		2.9
(-3)
A 		12.4
(1.6)
A 		13
avr 14.8
(3) 		12
(1.4) 		4.4
(-3) 		6
(-2.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.1
(-1)
A 		8.6
(-0.1)
A 		0.8
(-3)
A 		2.4
(-2.4)
A 		3.1
(-2.1)
A 		16.7
(3)
A 		16
B 5.9
(-1.7)
A 		10.6
(0.2)
A 		2.7
(-3)
A 		7.5
(-1)
A 		17.3
(3)
A 		6.2
(-1.6)
A 		15
C 15.9
(3)
A 		13.7
(2)
A 		2.6
(-2.8)
A 		9.4
(0.2)
A 		2.1
(-3)
A 		9.9
(0.4)
A 		14
avr 9.3
(1.9) 		11
(3) 		2
(-3) 		6.4
(-0.1) 		7.5
(0.7) 		10.9
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184842_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4971
Sequence Type Exemplar sequence
Representative Public ID F16G10.3 NCBI
Target Description F16G10.3 /REP_DB=WormBase Gene ID /WP=CE19392 /TR=O76589 /GB=AAC26271.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061857 NCBI Caenorhabditis elegans F16G10.3 (F16G10.3) mRNA, complete cds. 11/11 None
SNAP00000023115 ENSEMBL cdna:SNAP chromosome:CEL140:II:2372454:2374321:1 9/11 None
GENEFINDER00000023139 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2372400:2374337:1 10/11 None
F16G10.3 ENSEMBL cdna:known chromosome:CEL140:II:2372391:2374182:1 gene:F16G10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2372389-2374181(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.3
Entrez Gene 184578 Entrez gene
SwissProt O76589 EMBL-EBI
WormBase CE19392 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26271 Hypothetical protein F16G10.3 [Caenorhabditis elegans] ref|NP_494258.1| F16G10.3 [Caenorhabditis elegans] 1.0E-106
blast AAC26271 Hypothetical protein F16G10.3 [Caenorhabditis elegans] ref|NP_494258.1| F16G10.3 [Caenorhabditis elegans] 6.0E-84
blast AAC26271 Hypothetical protein F16G10.3 [Caenorhabditis elegans] ref|NP_494258.1| F16G10.3 [Caenorhabditis elegans] 4.0E-72
blast AAC26272 Hypothetical protein F16G10.4 [Caenorhabditis elegans] ref|NP_494257.1| F16G10.4 [Caenorhabditis elegans] 3.0E-24
blast AAC26272 Hypothetical protein F16G10.4 [Caenorhabditis elegans] ref|NP_494257.1| F16G10.4 [Caenorhabditis elegans] 2.0E-22
blast AAB71071 Hypothetical protein ZK250.2 [Caenorhabditis elegans] ref|NP_494137.1| ZK250.2 [Caenorhabditis elegans] 1.0E-21
blast AAF35427 Hypothetical protein C52E2.3 [Caenorhabditis elegans] ref|NP_494095.1| C52E2.3 [Caenorhabditis elegans] 1.0E-21
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 9.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 8.1E-73
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 2.9E-61
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.1E-58
Sequence
Target Sequence 
>C. ELEGANS:184842_AT
gatggctgcatgcgaaccataccaccggatgaagcttatatatctagcacactggctcct
gaggaaagttctagtacaatggatcccgatgatacggttacggcagaggtatttttaaac
aaacataacgaagtacaaactgttgaccaagatggctgcactgtattaaaatgtcccgca
ggcaaaactccagctgtctcttctctttatgataaaagtgaaataccagcgcctattgat
gctgatgccgattatatgacgtttggaagtataaataaagattcaatggccgacatcaac
ggagacatgatttttgaatattttggagcaatgtgtgaaggcggtgaattaatatacaca
aattatcctgatggaatagcgtatgtcaaagatggaaacatggcatatactggcccagat
gcatcgtataacggaaagaagtctaaagtgactacgatctattggtgggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTGCATGCGAACCATACCAC 38 407 67 Antisense
GAACCATACCACCGGATGAAGCTTA 506 345 80 Antisense
GCACACTGGCTCCTGAGGAAAGTTC 429 317 113 Antisense
AAGTTCTAGTACAATGGATCCCGAT 495 155 132 Antisense
GGATCCCGATGATACGGTTACGGCA 101 407 147 Antisense
TGACCAAGATGGCTGCACTGTATTA 217 569 210 Antisense
TAAAATGTCCCGCAGGCAAAACTCC 5 641 233 Antisense
AGCTGTCTCTTCTCTTTATGATAAA 481 81 258 Antisense
GCGCCTATTGATGCTGATGCCGATT 708 287 295 Antisense
TACTGGCCCAGATGCATCGTATAAC 499 647 474 Antisense
AAGTGACTACGATCTATTGGTGGGT 511 157 512 Antisense
Sequence Source Affymetrix Proprietary Database