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[184841_at]

Description F56E10.1 /REP_DB=WormBase Gene ID /WP=CE19901 /TR=Q9TXN9 /GB=AAC69220.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 43.4
(3)
A 		6.7
(-2.9)
A 		7.8
(-2.7)
A 		5.8
(-3)
A 		38
B 35.3
(3)
A 		7.3
(-3)
A 		9.5
(-2.5)
A 		12.7
(-1.8)
A 		28
C 13.1
(-2.4)
A 		5.7
(-3)
A 		5.8
(-3)
A 		76
(3)
A 		70
avr 30.6
(2.8) 		6.6
(-3) 		7.7
(-2.7) 		31.5
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 9.5
(-2)
A 		8.2
(-2.3)
A 		32.1
(3)
A 		5
(-3)
A 		5.5
(-2.9)
A 		5.5
(-2.9)
A 		27
B 6.8
(-2.6)
A 		26.3
(-0.7)
A 		29.6
(-0.4)
A 		19.2
(-1.4)
A 		3.1
(-3)
A 		63.4
(3)
A 		60
C 6
(-2.8)
A 		5.6
(-2.9)
A 		11.3
(-1.3)
A 		9.6
(-1.8)
A 		26.4
(3)
A 		5.2
(-3)
A 		21
avr 7.4
(-3) 		13.4
(-0.9) 		24.3
(2.9) 		11.3
(-1.6) 		11.7
(-1.5) 		24.7
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.8
(3)
A 		1.5
(-2.7)
A 		2
(-2.5)
A 		0.8
(-3)
A 		15
B 11.3
(3)
A 		1.8
(-3)
A 		2.2
(-2.7)
A 		2.7
(-2.4)
A 		10
C 4.4
(-1.5)
A 		1.7
(-3)
A 		2
(-2.8)
A 		12.8
(3)
A 		11
avr 10.5
(3) 		1.7
(-3) 		2.1
(-2.7) 		5.4
(-0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.7
(-2.6)
A 		2.9
(-1.3)
A 		7
(3)
A 		1.3
(-3)
A 		1.7
(-2.6)
A 		1.3
(-3)
A 		6
B 2.4
(-2.7)
A 		8.7
(-1)
A 		7.2
(-1.4)
A 		5.1
(-2)
A 		1.3
(-3)
A 		23.6
(3)
A 		22
C 2.2
(-2.6)
A 		1.7
(-3)
A 		2.9
(-1.9)
A 		1.9
(-2.8)
A 		8.5
(3)
A 		1.7
(-3)
A 		7
avr 2.1
(-3) 		4.4
(-1) 		5.7
(0.2) 		2.8
(-2.4) 		3.8
(-1.5) 		8.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15927
Sequence Type Exemplar sequence
Representative Public ID F56E10.1 NCBI
Target Description F56E10.1 /REP_DB=WormBase Gene ID /WP=CE19901 /TR=Q9TXN9 /GB=AAC69220.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070734 NCBI Caenorhabditis elegans F56E10.1 (F56E10.1) mRNA, complete cds. 11/11 None
SNAP00000024060 ENSEMBL cdna:SNAP chromosome:CEL140:V:104658:105788:1 11/11 None
GENEFINDER00000024063 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:104658:105792:1 11/11 None
F56E10.1 ENSEMBL cdna:known chromosome:CEL140:V:104658:105792:1 gene:F56E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:104657-105792(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56E10.1
Entrez Gene 186391 Entrez gene
SwissProt Q9TXN9 EMBL-EBI
WormBase CE19901 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69220 Hypothetical protein F56E10.1 [Caenorhabditis elegans] ref|NP_503135.1| F56E10.1 [Caenorhabditis elegans] 1.0E-155
blast AAC69220 Hypothetical protein F56E10.1 [Caenorhabditis elegans] ref|NP_503135.1| F56E10.1 [Caenorhabditis elegans] 1.0E-154
blast CAE62363 Hypothetical protein CBG06447 [Caenorhabditis briggsae] 4.0E-93
Sequence
Target Sequence 
>C. ELEGANS:184841_AT
ctcgacgagccaccgagattggcgaaaatgcttcaagttttcatagcgagccaccggaat
ctggcgaaattatgtgaaaaagaagtggaaaatgcggatgaaaaggagaaggagcaactg
aaaagtgaagaaattcaacatttatgtcaagttctggcttatgaaccgaatagttcggat
atttggctcgacgtcgcacttaaatcaatagaattcggggatttaaacttttcaaaatat
gctttcaaacggtgtgagaccctaaaagagtccctggaatcccacgcaactctgctatat
ttaacgtgtgattacaacgaaagtctgatgattatgaaacaattccaagagcaaaatgat
gtgttaaatgataaattaaagtacctgaagcataaaatccgatccacaaatcaatattat
aaactatcgtgtgatcgaattttcgaggaagatgaagtttatgcggacgtccaaagtgtt
gaaaaacggaaaattcaggatttcgacgagcgaattgaggcgttgcggagccgagttgtg
gggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGACGAGCCACCGAGATTGGCGA 439 233 460 Antisense
TAGCGAGCCACCGGAATCTGGCGAA 680 649 503 Antisense
GTTCGGATATTTGGCTCGACGTCGC 533 441 632 Antisense
GCTCGACGTCGCACTTAAATCAATA 96 299 645 Antisense
ATGCTTTCAAACGGTGTGAGACCCT 336 43 698 Antisense
TAAAAGAGTCCCTGGAATCCCACGC 534 627 722 Antisense
AATCCCACGCAACTCTGCTATATTT 62 169 737 Antisense
GTACCTGAAGCATAAAATCCGATCC 646 457 840 Antisense
GATGAAGTTTATGCGGACGTCCAAA 199 411 910 Antisense
CGAGCGAATTGAGGCGTTGCGGAGC 372 249 966 Antisense
GTTGCGGAGCCGAGTTGTGGGGAAA 269 437 981 Antisense
Sequence Source Affymetrix Proprietary Database