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[184840_at]

Description Y46G5A.20 /REP_DB=WormBase Gene ID /WP=CE24293 /TR=Q9U2E9 /GB=CAB60362.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 82      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 81      6grp_total > 73      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 76
(-3)
P 		128.8
(-0.5)
P 		147.9
(0.4)
P 		202.4
(3)
P 		126
B 78.3
(-3)
P 		105.1
(-1.4)
P 		161.6
(1.9)
P 		179.9
(3)
P 		102
C 102.7
(-1.3)
P 		75.3
(-3)
P 		132.8
(0.6)
P 		170.2
(3)
P 		95
avr 85.7
(-3) 		103.1
(-1.9) 		147.4
(0.8) 		184.2
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 164.9
(-3)
P 		192.6
(-2.5)
P 		288.2
(-1)
P 		526.8
(3)
P 		248.9
(-1.6)
P 		282.8
(-1)
P 		362
B 120.6
(-3)
P 		168.3
(-1.3)
P 		291.1
(3)
P 		256.9
(1.8)
P 		223.6
(0.6)
P 		209.1
(0.1)
P 		171
C 164.1
(-3)
P 		183.8
(-2.6)
P 		298.9
(0)
P 		353.9
(1.3)
P 		430.3
(3)
P 		207.5
(-2)
P 		266
avr 149.9
(-3) 		181.6
(-2.2) 		292.7
(0.7) 		379.2
(3) 		300.9
(1) 		233.1
(-0.8) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 27.7
(-3)
P 		28
(-2.8)
P 		38.7
(3)
P 		29.6
(-2)
P 		11
B 25
(-3)
P 		26
(-2.5)
P 		37.4
(2.6)
P 		38.3
(3)
P 		13
C 34
(0)
P 		21.7
(-3)
P 		46.3
(3)
P 		28.7
(-1.3)
P 		25
avr 28.9
(-1.6) 		25.2
(-3) 		40.8
(3) 		32.2
(-0.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 30.4
(-3)
P 		68.5
(-0.8)
P 		62.8
(-1.1)
P 		133.6
(3)
P 		75.1
(-0.4)
P 		68.9
(-0.8)
P 		103
B 42
(-3)
P 		56
(-1.3)
P 		70.7
(0.5)
P 		68
(0.2)
P 		90.8
(3)
P 		78
(1.4)
P 		49
C 60.8
(-2.7)
P 		56.1
(-3)
P 		76.1
(-1.6)
P 		71.2
(-1.9)
P 		139.2
(3)
P 		69.5
(-2)
P 		83
avr 44.4
(-3) 		60.2
(-1.3) 		69.9
(-0.3) 		90.9
(1.9) 		101.7
(3) 		72.1
(-0.1) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3062
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.20 NCBI
Target Description Y46G5A.20 /REP_DB=WormBase Gene ID /WP=CE24293 /TR=Q9U2E9 /GB=CAB60362.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064323 NCBI Caenorhabditis elegans Y46G5A.20 (Y46G5A.20) mRNA, complete cds. 11/11 None
Y46G5A.20 ENSEMBL cdna:known chromosome:CEL140:II:12810961:12811832:1 gene:Y46G5A.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12810995-12811691(+) 76.06 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.20
Entrez Gene 174915 Entrez gene
SwissProt Q9U2E9 EMBL-EBI
WormBase CE24293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60362 Hypothetical protein Y46G5A.20 [Caenorhabditis elegans] ref|NP_496724.1| Y46G5A.20 [Caenorhabditis elegans] 8.0E-28
Sequence
Target Sequence 
>C. ELEGANS:184840_AT
gtgccattctacagcatgcgttggctattccggtggagattgtttttacttcaagttgtg
ccaggattcgtttcctcgtcatgcaccgcgtcgtagatcatcatcatcatcatcttcttc
ttcttcttctacttcttcttcttcgtcttccaactcttcagaatcagatgaccaagtcgg
ccagctgagcacccggtaccagaaccagaaccttagtgagtcatcttcagaaagttcggt
tagctcatcggatgactcatctgatgactcctcagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCATTCTACAGCATGCGTTGGC 439 477 30 Antisense
ATGCGTTGGCTATTCCGGTGGAGAT 306 39 45 Antisense
TCCGGTGGAGATTGTTTTTACTTCA 221 583 58 Antisense
AAGTTGTGCCAGGATTCGTTTCCTC 536 155 82 Antisense
ACCGCGTCGTAGATCATCATCATCA 284 89 114 Antisense
TTCGTCTTCCAACTCTTCAGAATCA 697 695 171 Antisense
CAGATGACCAAGTCGGCCAGCTGAG 163 207 194 Antisense
AGAACCAGAACCTTAGTGAGTCATC 610 73 230 Antisense
GTGAGTCATCTTCAGAAAGTTCGGT 121 483 245 Antisense
AAGTTCGGTTAGCTCATCGGATGAC 699 149 261 Antisense
TGACTCATCTGATGACTCCTCAGAT 38 571 282 Antisense
Sequence Source Affymetrix Proprietary Database